HHsearch alignment for GI: 254780872 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.99 E-value=7.1e-10 Score=81.92 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=77.9
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCE--EEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 01628885698569999997319816--99521356778888653101121--111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATV--TGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V--~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
T Consensus 28 ~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~d~Iv~nPPY 107 (171)
T pfam01170 28 PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTIVTDPPY 107 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEEECCCC
T ss_conf 99978868998789999999961358953675879999999999998289984699976665387987883189988982
Q ss_pred -HCC-------CCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf -026-------88889988887521333215774367
Q gi|254780872|r 142 -EHV-------DNIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 142 -eHv-------~d~~~~l~~~~~~LkpgG~liist~N 170 (254)
T Consensus 108 G~r~~~~~~~~~ly~~~~~~~~~~~~-g~~~~i~~~~ 143 (171)
T pfam01170 108 GIRIGSKGALEKLYPAFLDEAKRVLR-GRLVFATPEK 143 (171)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 01136545699999999999998689-9789999686