HHsearch alignment for GI: 254780872 and conserved domain: pfam01269
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.93 E-value=0.00011 Score=49.61 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=77.1
Q ss_pred CHHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHH----HHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCH
Q ss_conf 800162888569856999999731-9--8169952135677----88886531011211112210012321----11530
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNI----AIAKNHANMKNINIDYRVSCAEEIAE----TDEKF 132 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i----~~Ak~~a~~~~~~i~~~~~~~~~l~~----~~~~F 132 (254)
T Consensus 71 i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~-----R~NIvPIl~DAr~-P~~Y~~lv~~V 144 (229)
T pfam01269 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKK-----RPNIVPILEDARH-PQKYRMLVEMV 144 (229)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC-----CCCCEEEECCCCC-HHHHHHHCCCC
T ss_conf 58998799944777985767887228895399997173557899999742-----7994457667787-56765425566
Q ss_pred HHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHH
Q ss_conf 13001243102688889988887521333215774367660245641565543104678998571225388999999998
Q gi|254780872|r 133 DIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAA 212 (254)
Q Consensus 133 D~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~ 212 (254)
T Consensus 145 D~ifq-DvaQ-~~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~-----------t~-~p~-----~vf---~~e~~~L~~ 202 (229)
T pfam01269 145 DVIFA-DVAQ-PDQARILALNAKYFLKNGGYFMISIKARSIDV-----------TK-EPE-----EVF---AREVEKLKE 202 (229)
T ss_pred CEEEE-CCCC-HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CC-CHH-----HHH---HHHHHHHHH
T ss_conf 68996-2787-77899999999986126988999997134216-----------78-989-----999---999999987
Q ss_pred CCCEEEEEEE
Q ss_conf 6983888550
Q gi|254780872|r 213 NKVKIIDRVG 222 (254)
Q Consensus 213 ~g~~~~~~~g 222 (254)
T Consensus 203 ~~~~~~e~i~ 212 (229)
T pfam01269 203 EGFKPKEQVT 212 (229)
T ss_pred CCCCEEEEEC
T ss_conf 6996589980