HHsearch alignment for GI: 254780872 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.23 E-value=4.1e-06 Score=58.59 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC------C-CCCCCHHHHE
Q ss_conf 01628885698569999997319--8169952135677888865310112111122100123------2-1115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI------A-ETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l------~-~~~~~FD~V~ 136 (254)
T Consensus 21 ~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~ 90 (176)
T pfam01728 21 GGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK----------PIQGVTFLRGDITDPETLEKLLELLPGKVDLVL 90 (176)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999689997699999985668739999734465----------677845651676687899999997399846897
Q ss_pred ECCCH-----HCCCC------HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 12431-----02688------88998888752133321577436
Q gi|254780872|r 137 NMEVI-----EHVDN------IPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 137 ~~~vl-----eHv~d------~~~~l~~~~~~LkpgG~liist~ 169 (254)
T Consensus 91 sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f 134 (176)
T pfam01728 91 CDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLF 134 (176)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 33665656773347899999999999999998243763999998