HHsearch alignment for GI: 254780872 and conserved domain: pfam01728

>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.23  E-value=4.1e-06  Score=58.59  Aligned_cols=94  Identities=18%  Similarity=0.234  Sum_probs=58.2

Q ss_pred             HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC------C-CCCCCHHHHE
Q ss_conf             01628885698569999997319--8169952135677888865310112111122100123------2-1115301300
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI------A-ETDEKFDIIL  136 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l------~-~~~~~FD~V~  136 (254)
T Consensus        21 ~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~   90 (176)
T pfam01728        21 GGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK----------PIQGVTFLRGDITDPETLEKLLELLPGKVDLVL   90 (176)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf             9999999689997699999985668739999734465----------677845651676687899999997399846897


Q ss_pred             ECCCH-----HCCCC------HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             12431-----02688------88998888752133321577436
Q gi|254780872|r  137 NMEVI-----EHVDN------IPYFIKTCCSLLLSNGLMFISTI  169 (254)
Q Consensus       137 ~~~vl-----eHv~d------~~~~l~~~~~~LkpgG~liist~  169 (254)
T Consensus        91 sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f  134 (176)
T pfam01728        91 CDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLF  134 (176)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             33665656773347899999999999999998243763999998