HHsearch alignment for GI: 254780872 and conserved domain: pfam01861
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=96.98 E-value=0.0024 Score=41.44 Aligned_cols=102 Identities=23% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCHHHCCEEEECCCHHHHHHHHH--HCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC-CCCCHHHHEEC
Q ss_conf 88001628885698569999997--319816995213567788886531011211112210012-321-11530130012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMA--QMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-IAE-TDEKFDIILNM 138 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la--~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l~~-~~~~FD~V~~~ 138 (254)
T Consensus 41 gdL~Gk~iL~vGDD-DLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TD 119 (243)
T pfam01861 41 GDLEGKEILVLGDD-DLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITD 119 (243)
T ss_pred CCCCCCEEEEECCC-CHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECC
T ss_conf 88579879997286-18789999648985489996758999999999997499716887410148999996167989718
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEE-EE
Q ss_conf 43102688889988887521333215-77
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLM-FI 166 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~l-ii 166 (254)
T Consensus 120 -PPyT~~G~~LFlsRgi~~Lk~eg~agYf 147 (243)
T pfam01861 120 -PPETVDGLKAFLGRGIATLKGEGCAGYF 147 (243)
T ss_pred -CCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf -9987789999999999982668852268