HHsearch alignment for GI: 254780872 and conserved domain: pfam01861

>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=96.98  E-value=0.0024  Score=41.44  Aligned_cols=102  Identities=23%  Similarity=0.299  Sum_probs=72.4

Q ss_pred             CCHHHCCEEEECCCHHHHHHHHH--HCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC-CCCCHHHHEEC
Q ss_conf             88001628885698569999997--319816995213567788886531011211112210012-321-11530130012
Q gi|254780872|r   63 HPFKGLRILDLGCGGGLLSEPMA--QMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-IAE-TDEKFDIILNM  138 (254)
Q Consensus        63 ~~l~g~~VLDiGCG~G~~s~~la--~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l~~-~~~~FD~V~~~  138 (254)
T Consensus        41 gdL~Gk~iL~vGDD-DLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TD  119 (243)
T pfam01861        41 GDLEGKEILVLGDD-DLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITD  119 (243)
T ss_pred             CCCCCCEEEEECCC-CHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECC
T ss_conf             88579879997286-18789999648985489996758999999999997499716887410148999996167989718


Q ss_pred             CCHHCCCCHHHHHHHHHHHCCCCCEE-EE
Q ss_conf             43102688889988887521333215-77
Q gi|254780872|r  139 EVIEHVDNIPYFIKTCCSLLLSNGLM-FI  166 (254)
Q Consensus       139 ~vleHv~d~~~~l~~~~~~LkpgG~l-ii  166 (254)
T Consensus       120 -PPyT~~G~~LFlsRgi~~Lk~eg~agYf  147 (243)
T pfam01861       120 -PPETVDGLKAFLGRGIATLKGEGCAGYF  147 (243)
T ss_pred             -CCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             -9987789999999999982668852268