HHsearch alignment for GI: 254780872 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.93 E-value=4e-05 Score=52.46 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=68.1
Q ss_pred CHHHCCEEEECCCHHHHHHHHH----HC-----CCCEEEECCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCC--CC
Q ss_conf 8001628885698569999997----31-----98169952135677888865310112---11112210012321--11
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMA----QM-----GATVTGIDPSTKNIAIAKNHANMKNI---NIDYRVSCAEEIAE--TD 129 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la----~~-----g~~V~giD~S~~~i~~Ak~~a~~~~~---~i~~~~~~~~~l~~--~~ 129 (254)
T Consensus 44 p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i~~gdsl~~~~~~~~ 123 (312)
T pfam02384 44 PKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGIRHGDTLLSPKFEED 123 (312)
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999882168773378999999999843785565563688998999999999998479887455214776557676654
Q ss_pred CCHHHHEECCCH-------HCC-CC--------------HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 530130012431-------026-88--------------889988887521333215774367
Q gi|254780872|r 130 EKFDIILNMEVI-------EHV-DN--------------IPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 130 ~~FD~V~~~~vl-------eHv-~d--------------~~~~l~~~~~~LkpgG~liist~N 170 (254)
T Consensus 124 ~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiVlp~ 186 (312)
T pfam02384 124 KKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVVLPN 186 (312)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 551189837864667665432102721103687888744299999999856999769999558