HHsearch alignment for GI: 254780872 and conserved domain: pfam02527
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=98.78 E-value=7e-08 Score=69.56 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=93.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731--98169952135677888865310112-11112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
T Consensus 48 ~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~-~~~~~D~v~aRA~-- 124 (184)
T pfam02527 48 IRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ-HEEQYDVITSRAV-- 124 (184)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC-CCCCCCEEEECHH--
T ss_conf 7986883479888467999996778559999282899999999999859997699956044146-4467878998100--
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 26888899888875213332157743676602456415655431046789985712253889999999986983888550
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g 222 (254)
T Consensus 125 --a~l~~ll~~~~~~l~~~g~~i~~------------------------KG~-~~~~El--~~a~~~~~~l~~~~~~v~~ 175 (184)
T pfam02527 125 --ASLNELTEWALPLLKPGGYFLAY------------------------KGK-QAEDEI--EELDKACQKLGVEVLFVPS 175 (184)
T ss_pred --CCHHHHHHHHHHHCCCCCEEEEE------------------------CCC-CHHHHH--HHHHHHHHHHCCEEEECCC
T ss_conf --57999999999863889899998------------------------899-989999--9878779982977976489
Q ss_pred E
Q ss_conf 5
Q gi|254780872|r 223 V 223 (254)
Q Consensus 223 ~ 223 (254)
T Consensus 176 ~ 176 (184)
T pfam02527 176 L 176 (184)
T ss_pred C
T ss_conf 8