HHsearch alignment for GI: 254780872 and conserved domain: pfam03059
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=97.72 E-value=0.00085 Score=44.21 Aligned_cols=145 Identities=14% Similarity=0.221 Sum_probs=96.0
Q ss_pred CCEEEECCCH-HHHHHHHHHC-CC--CEEEECCHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 6288856985-6999999731-98--16995213567788886531011---2111122100123211153013001243
Q gi|254780872|r 68 LRILDLGCGG-GLLSEPMAQM-GA--TVTGIDPSTKNIAIAKNHANMKN---INIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 68 ~~VLDiGCG~-G~~s~~la~~-g~--~V~giD~S~~~i~~Ak~~a~~~~---~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
T Consensus 123 ~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lAAL 202 (277)
T pfam03059 123 SRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLAAL 202 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEHHH
T ss_conf 44899637886138999988508873143312788999999999986553004728995264444444454768987211
Q ss_pred H-HCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 1-026888899888875213332157743676602456415655431046789985712253889999999986983888
Q gi|254780872|r 141 I-EHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 141 l-eHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
T Consensus 203 VGm~~e~K~~I~~hL~k~m~~Ga~l~~----Rsa~-------GlR~~LY--p~--------vd~~~------~~GFe~l~ 255 (277)
T pfam03059 203 VGMDKEEKAKVIDHLGKHMAPGALLVL----RSAH-------GARAFLY--PV--------VDPCD------LRGFEVLS 255 (277)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE----ECCH-------HHHHHCC--CC--------CCHHH------CCCCEEEE
T ss_conf 354333599999999974589967999----6112-------1787628--87--------89667------38707999
Q ss_pred EEEEEECCCCCEEEECCCCCCEEEEEEEECCCC
Q ss_conf 550576677775786478864517999975877
Q gi|254780872|r 220 RVGVVYNVFCNKWQLSAKNMDVNYMVLGHLPKT 252 (254)
Q Consensus 220 ~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp~~ 252 (254)
T Consensus 256 ~----~hP---------~~~ViNSvI~~rk~~~ 275 (277)
T pfam03059 256 V----YHP---------TDEVINSVIVARKKIV 275 (277)
T ss_pred E----ECC---------CCCCEEEEEEEECCCC
T ss_conf 9----889---------9984113899833777