HHsearch alignment for GI: 254780872 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.59 E-value=6.1e-15 Score=113.32 Aligned_cols=103 Identities=26% Similarity=0.392 Sum_probs=82.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 01628885698569999997319--81699521356778888653101121-1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
T Consensus 31 ~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~-~~~~~fD~IvsNPP~- 108 (170)
T pfam05175 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSA-VEPGKFDLIISNPPF- 108 (170)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCEEEEEECCCC-
T ss_conf 899499977648298999999789867985154499999999999980998489997446665-778866089989772-
Q ss_pred CC---CC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 26---88---8899888875213332157743676
Q gi|254780872|r 143 HV---DN---IPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 143 Hv---~d---~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
T Consensus 109 h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~-n~ 142 (170)
T pfam05175 109 HAGKATDYDVAQRFIAGAARHLKPGGELWIVA-NR 142 (170)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-EC
T ss_conf 11420328999999999999616497999999-89