HHsearch alignment for GI: 254780872 and conserved domain: pfam05175

>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.59  E-value=6.1e-15  Score=113.32  Aligned_cols=103  Identities=26%  Similarity=0.392  Sum_probs=82.4

Q ss_pred             HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf             01628885698569999997319--81699521356778888653101121-1112210012321115301300124310
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIE  142 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vle  142 (254)
T Consensus        31 ~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~-~~~~~fD~IvsNPP~-  108 (170)
T pfam05175        31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSA-VEPGKFDLIISNPPF-  108 (170)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCEEEEEECCCC-
T ss_conf             899499977648298999999789867985154499999999999980998489997446665-778866089989772-


Q ss_pred             CC---CC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             26---88---8899888875213332157743676
Q gi|254780872|r  143 HV---DN---IPYFIKTCCSLLLSNGLMFISTINR  171 (254)
Q Consensus       143 Hv---~d---~~~~l~~~~~~LkpgG~liist~Nr  171 (254)
T Consensus       109 h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~-n~  142 (170)
T pfam05175       109 HAGKATDYDVAQRFIAGAARHLKPGGELWIVA-NR  142 (170)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-EC
T ss_conf             11420328999999999999616497999999-89