HHsearch alignment for GI: 254780872 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=95.75 E-value=0.11 Score=31.19 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=65.3
Q ss_pred CCEEEECCCHH-HHHHHH---HHCC--CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 62888569856-999999---7319--8169952135677888865310112--11112210012321115301300124
Q gi|254780872|r 68 LRILDLGCGGG-LLSEPM---AQMG--ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 68 ~~VLDiGCG~G-~~s~~l---a~~g--~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~-~p~k~Di~VS-E 265 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWK-GPEKADILVS-E 265 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC-CCCCCCEEEE-E
T ss_conf 6999985896489999999999819966999995687799999998505431780699908000579-9877358975-2
Q ss_pred CHHCCCCH---HHHHHHHHHHCCCCCEEE
Q ss_conf 31026888---899888875213332157
Q gi|254780872|r 140 VIEHVDNI---PYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 140 vleHv~d~---~~~l~~~~~~LkpgG~li 165 (254)
T Consensus 266 LLGSFGDNELSPECLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 LLGSFGDNELSPECLDGAQRFLKPDGISI 294 (447)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 11666665579778778997468984682