HHsearch alignment for GI: 254780872 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=99.53 E-value=4.6e-15 Score=114.08 Aligned_cols=120 Identities=26% Similarity=0.390 Sum_probs=96.5
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC-
Q ss_conf 6288856985699999973198169952135677888865310112111122100123211153013001243102688-
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN- 146 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d- 146 (254)
T Consensus 45 ~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla-~~~hV~v~~~~vp~~-wP~~~FDLIV~SEVlYYL~d~ 122 (201)
T pfam05401 45 ANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMK-KWSHISWIVSDVQQF-STNELFDLIVVAEVLYYLGDV 122 (201)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCEEEECCCCCC-CCCCCEEEEEEEHHHHHHCCH
T ss_conf 002043566248789999987467321362999999999855-799828982566665-998886279751477861879
Q ss_pred --HHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf --88998888752133321577436-766024564156554310467
Q gi|254780872|r 147 --IPYFIKTCCSLLLSNGLMFISTI-NRNLKAMLLAIIGAEYLLQWL 190 (254)
Q Consensus 147 --~~~~l~~~~~~LkpgG~liist~-Nr~~~s~~~~i~~ae~il~~~ 190 (254)
T Consensus 123 a~lr~~~~~~v~~LaP~G~Lvfgsarda~crrw-gh~~gaetv~~~~ 168 (201)
T pfam05401 123 AEMRGAVRNLVSMLAPDGQLVFGSARDANCRRW-GHVAGAETVIALL 168 (201)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-CCHHHHHHHHHHH
T ss_conf 999999999999718996599730451066551-0111189999999