HHsearch alignment for GI: 254780872 and conserved domain: pfam05401

>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=99.53  E-value=4.6e-15  Score=114.08  Aligned_cols=120  Identities=26%  Similarity=0.390  Sum_probs=96.5

Q ss_pred             CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC-
Q ss_conf             6288856985699999973198169952135677888865310112111122100123211153013001243102688-
Q gi|254780872|r   68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN-  146 (254)
Q Consensus        68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d-  146 (254)
T Consensus        45 ~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla-~~~hV~v~~~~vp~~-wP~~~FDLIV~SEVlYYL~d~  122 (201)
T pfam05401        45 ANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMK-KWSHISWIVSDVQQF-STNELFDLIVVAEVLYYLGDV  122 (201)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCEEEECCCCCC-CCCCCEEEEEEEHHHHHHCCH
T ss_conf             002043566248789999987467321362999999999855-799828982566665-998886279751477861879


Q ss_pred             --HHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             --88998888752133321577436-766024564156554310467
Q gi|254780872|r  147 --IPYFIKTCCSLLLSNGLMFISTI-NRNLKAMLLAIIGAEYLLQWL  190 (254)
Q Consensus       147 --~~~~l~~~~~~LkpgG~liist~-Nr~~~s~~~~i~~ae~il~~~  190 (254)
T Consensus       123 a~lr~~~~~~v~~LaP~G~Lvfgsarda~crrw-gh~~gaetv~~~~  168 (201)
T pfam05401       123 AEMRGAVRNLVSMLAPDGQLVFGSARDANCRRW-GHVAGAETVIALL  168 (201)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-CCHHHHHHHHHHH
T ss_conf             999999999999718996599730451066551-0111189999999