HHsearch alignment for GI: 254780872 and conserved domain: pfam06859
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=96.02 E-value=0.017 Score=36.06 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=55.1
Q ss_pred CHHHHEECCCHH--CCC--C--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-CCCH
Q ss_conf 301300124310--268--8--88998888752133321577436766024564156554310467899857122-5388
Q gi|254780872|r 131 KFDIILNMEVIE--HVD--N--IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDK-FIKP 203 (254)
Q Consensus 131 ~FD~V~~~~vle--Hv~--d--~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~-Fi~p 203 (254)
T Consensus 1 ~fD~i~clSvtkWIHLN~GD~Gl~~~f~~~~~~l~pgg~lilEp--Q~w~sY~k~kkl~~~~~~-------ny~~I~~rP 71 (110)
T pfam06859 1 EFDVILCLSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILILEP--QPWDSYKKRKKLSETIYK-------NYERIKLKP 71 (110)
T ss_pred CCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHCCHHHHH-------HHHHHEECH
T ss_conf 96589996620245554642889999999999618898899967--884668877314799985-------355427787
Q ss_pred HHHHHHHHH--CCCEEEEEEEE
Q ss_conf 999999998--69838885505
Q gi|254780872|r 204 TEMECFLAA--NKVKIIDRVGV 223 (254)
Q Consensus 204 ~el~~~l~~--~g~~~~~~~g~ 223 (254)
T Consensus 72 d~F~~yLl~~evGF~s~e~~~~ 93 (110)
T pfam06859 72 DQFEEYLLSPEVGFSSYELVGV 93 (110)
T ss_pred HHHHHHHHCCCCCEEEEEEECC
T ss_conf 8889998054668078999437