HHsearch alignment for GI: 254780872 and conserved domain: pfam06962
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=96.11 E-value=0.012 Score=37.07 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCC--CCCHHHH-EECCCHHC--------CCCHHHHHHHHHH
Q ss_conf 169952135677888865310112--111122100123211--1530130-01243102--------6888899888875
Q gi|254780872|r 90 TVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAET--DEKFDII-LNMEVIEH--------VDNIPYFIKTCCS 156 (254)
Q Consensus 90 ~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~--~~~FD~V-~~~~vleH--------v~d~~~~l~~~~~ 156 (254)
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~~~tTi~Al~~al~ 80 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSITTKPDTTLEAIKKLLE 80 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 95799609999999999999659875689997798889863764676689996676889998758777209999999999
Q ss_pred HCCCCCEEEEE
Q ss_conf 21333215774
Q gi|254780872|r 157 LLLSNGLMFIS 167 (254)
Q Consensus 157 ~LkpgG~liis 167 (254)
T Consensus 81 lL~~gG~i~i~ 91 (140)
T pfam06962 81 LLKPGGLIILV 91 (140)
T ss_pred HHCCCCEEEEE
T ss_conf 63669899999