HHsearch alignment for GI: 254780872 and conserved domain: pfam07091

>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=96.96  E-value=0.0017  Score=42.34  Aligned_cols=154  Identities=17%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHH-HC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             565999999988651876444588001628885698569999997-31-9816995213567788886531011211112
Q gi|254780872|r   41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMA-QM-GATVTGIDPSTKNIAIAKNHANMKNINIDYR  118 (254)
Q Consensus        41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la-~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~  118 (254)
T Consensus        83 rERL~~ld~fY~~if~~~~------~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~  156 (248)
T pfam07091        83 RERLPILDEFYAEIFGALP------PPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVR  156 (248)
T ss_pred             HHHHHHHHHHHHHHHHCCC------CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             4210358999999983489------9864420002688301423368998679997077789999999998629876379


Q ss_pred             CCCCCCCCCCCCCHHHHEECCCHHCCCCHHH--HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             2100123211153013001243102688889--98888752133321577436766024564156554310467899857
Q gi|254780872|r  119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY--FIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQ  196 (254)
Q Consensus       119 ~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~--~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~  196 (254)
T Consensus       157 ~~Dl~~~~-p~~~~DvaLllK~lp~LE~q~~G~g~~ll-~~l~~-~~vVVSFPtrsLgGR~---------kGm~~--~--  220 (248)
T pfam07091       157 VRDLLTDP-PAEPADVALLLKTLPLLEQQRRGAGLDLL-DALNA-PHVVVSFPTRSLGGRS---------KGMEA--T--  220 (248)
T ss_pred             EEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCHHHHH-HHHCC-CEEEEECCCCCCCCCC---------CCCCC--C--
T ss_conf             87610479-98873400475527789887026078999-98379-8389965641226766---------64446--6--


Q ss_pred             HHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             1225388999999998698388855
Q gi|254780872|r  197 YDKFIKPTEMECFLAANKVKIIDRV  221 (254)
Q Consensus       197 ~~~Fi~p~el~~~l~~~g~~~~~~~  221 (254)
T Consensus       221 y-----~~~fe~~~~~r~~~~~~~~  240 (248)
T pfam07091       221 Y-----SAWFEALVAGRGWIVDRLE  240 (248)
T ss_pred             H-----HHHHHHHCCCCCCEEEEEE
T ss_conf             8-----8999976036874345666