HHsearch alignment for GI: 254780872 and conserved domain: pfam08704

>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.97  E-value=7.9e-09  Score=75.43  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=77.3

Q ss_pred             HHHCCEEEECCCHHHHHHHHHHCC---CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC---CCCCHHHHE
Q ss_conf             001628885698569999997319---8169952135677888865310112--11112210012321---115301300
Q gi|254780872|r   65 FKGLRILDLGCGGGLLSEPMAQMG---ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAE---TDEKFDIIL  136 (254)
Q Consensus        65 l~g~~VLDiGCG~G~~s~~la~~g---~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~---~~~~FD~V~  136 (254)
T Consensus       101 ~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~Vf  180 (309)
T pfam08704       101 KPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVF  180 (309)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEEE
T ss_conf             99999998367842999999997488865999844789999999999874987505889852001366644566435899


Q ss_pred             ECCCHHCCCCHHHHHHHHHHHCC-CCCEEEEECCC
Q ss_conf             12431026888899888875213-33215774367
Q gi|254780872|r  137 NMEVIEHVDNIPYFIKTCCSLLL-SNGLMFISTIN  170 (254)
Q Consensus       137 ~~~vleHv~d~~~~l~~~~~~Lk-pgG~liist~N  170 (254)
T Consensus       181 L-----Dlp~PW~ai~~~~~~Lk~~Gg~l~~f~P~  210 (309)
T pfam08704       181 L-----DLPAPWEAIPHAAKALKVEGGRLCSFSPC  210 (309)
T ss_pred             E-----CCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             7-----58997998899998606899689999198