HHsearch alignment for GI: 254780872 and conserved domain: pfam09243

>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=98.49  E-value=1.7e-06  Score=61.02  Aligned_cols=103  Identities=20%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             HHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCHHHHEECC
Q ss_conf             00162888569856999999731-9--8169952135677888865310112111--12210012321115301300124
Q gi|254780872|r   65 FKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNINID--YRVSCAEEIAETDEKFDIILNME  139 (254)
Q Consensus        65 l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~--~~~~~~~~l~~~~~~FD~V~~~~  139 (254)
T Consensus        33 f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~DLVi~sy  111 (275)
T pfam09243        33 FAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARH-IPALKHAWRARDVIGAALDFEPADLVTISY  111 (275)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHC-CCCCCCCEECCCCCCCCCCCCCCCEEEEEC
T ss_conf             9987577727757999999998842476899974899999999999851-843454311143101124589878899614


Q ss_pred             CHHCCCC--HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             3102688--889988887521333215774367
Q gi|254780872|r  140 VIEHVDN--IPYFIKTCCSLLLSNGLMFISTIN  170 (254)
Q Consensus       140 vleHv~d--~~~~l~~~~~~LkpgG~liist~N  170 (254)
T Consensus       112 ~L~El~~~~R~~~v~~LW~~~~--g~LVlVEpG  142 (275)
T pfam09243       112 VLDELTPASREKVIDNLWAKAA--QALVIVEPG  142 (275)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_conf             2207997899999999999539--979999189