HHsearch alignment for GI: 254780872 and conserved domain: pfam09243
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=98.49 E-value=1.7e-06 Score=61.02 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=66.8
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 00162888569856999999731-9--8169952135677888865310112111--12210012321115301300124
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNINID--YRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~--~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
T Consensus 33 f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~DLVi~sy 111 (275)
T pfam09243 33 FAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARH-IPALKHAWRARDVIGAALDFEPADLVTISY 111 (275)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHC-CCCCCCCEECCCCCCCCCCCCCCCEEEEEC
T ss_conf 9987577727757999999998842476899974899999999999851-843454311143101124589878899614
Q ss_pred CHHCCCC--HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 3102688--889988887521333215774367
Q gi|254780872|r 140 VIEHVDN--IPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 140 vleHv~d--~~~~l~~~~~~LkpgG~liist~N 170 (254)
T Consensus 112 ~L~El~~~~R~~~v~~LW~~~~--g~LVlVEpG 142 (275)
T pfam09243 112 VLDELTPASREKVIDNLWAKAA--QALVIVEPG 142 (275)
T ss_pred HHCCCCHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_conf 2207997899999999999539--979999189