RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9
3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (254 letters)



>gnl|CDD|32409 COG2227, UbiG,
           2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
           methylase [Coenzyme metabolism].
          Length = 243

 Score =  271 bits (694), Expect = 2e-73
 Identities = 116/234 (49%), Positives = 161/234 (68%), Gaps = 9/234 (3%)

Query: 12  NQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRIL 71
           +   +++F  +AS WW+P G+FKPLH+INP+R+ YI++     F           GLR+L
Sbjct: 13  DYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD--------LPGLRVL 64

Query: 72  DLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131
           D+GCGGG+LSEP+A++GA+VTGID S K I +AK HA    +NIDYR +  E++A    +
Sbjct: 65  DVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQ 124

Query: 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLP 191
           FD++  MEV+EHV +   F++ C  L+   G++F+STINR LKA LLAIIGAEY+L+ +P
Sbjct: 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVP 184

Query: 192 KGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMV 245
           KGTH Y KFIKP E+  +L    +KIIDR G+ YN   N W+LS  ++ VNYMV
Sbjct: 185 KGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNSWKLS-NDVSVNYMV 237


>gnl|CDD|36484 KOG1270, KOG1270, KOG1270, Methyltransferases [Coenzyme transport
           and metabolism].
          Length = 282

 Score =  217 bits (554), Expect = 2e-57
 Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 5/246 (2%)

Query: 6   PNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPF 65
            + T+ + D + +F  +A  WW+  G   PLH +N  R+ +I+D +       +  + P 
Sbjct: 29  ASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPL 88

Query: 66  KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANM---KNINIDYRVSCA 122
            G++ILD+GCGGGLLSEP+A++GA VTGID S   + +A  H  M       I YR+   
Sbjct: 89  LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE 148

Query: 123 EEIAETD-EKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAII 181
           +   E    KFD ++  EV+EHV +   F+    +LL  NG +FI+TINR + +    I 
Sbjct: 149 DTDVEGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIF 208

Query: 182 GAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDV 241
            AE +L+ +PKGTH ++KFI P E+   L AN  ++ D VG VYN    +W  S KN  +
Sbjct: 209 LAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYNPISGQWLWS-KNTSL 267

Query: 242 NYMVLG 247
           NY +  
Sbjct: 268 NYGIKA 273


>gnl|CDD|32411 COG2230, Cfa, Cyclopropane fatty acid synthase and related
           methyltransferases [Cell envelope biogenesis, outer
           membrane].
          Length = 283

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 66  KGLRILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124
            G+ +LD+GCG G L+   A+  G TV G+  S + +A A+     + +  +  V   ++
Sbjct: 72  PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR-LQD 130

Query: 125 IAETDEKFDIILNMEVIEHV--DNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180
             + +E FD I+++ + EHV  +N   F K   +LL   G M + +I    +      
Sbjct: 131 YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFP 188


>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
           methyltransferases (SAM or AdoMet-MTase), class I;
           AdoMet-MTases are enzymes that use
           S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
           for methyltransfer, creating the product
           S-adenosyl-L-homocysteine (AdoHcy). There are at least
           five structurally distinct families of AdoMet-MTases,
           class I being the largest and most diverse. Within this
           class enzymes can be classified by different substrate
           specificities (small molecules, lipids, nucleic acids,
           etc.) and different target atoms for methylation
           (nitrogen, oxygen, carbon, sulfur, etc.)..
          Length = 107

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 69  RILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAK-NHANMKNINIDYRVSCAEEIA 126
           R+LDLGCG G L+  +A   GA VTG+D S   + +A+   A +   N++     AEE+ 
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60

Query: 127 ET-DEKFD-IILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167
              DE FD II +  +   V+++  F++    LL   G++ ++
Sbjct: 61  PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103


>gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
           [General function prediction only].
          Length = 287

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 61  DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDY-RV 119
           D  PF+  R+LDLGCG GL  E +  M   +TG+D S   +A A            Y  +
Sbjct: 122 DLGPFR--RMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG-------LYDTL 172

Query: 120 SCAEEIA----ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167
             AE +      T E+FD+I+  +V+ ++  +         LL   GL   S
Sbjct: 173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224


>gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
           biosynthesis [Coenzyme metabolism].
          Length = 238

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 4   KYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTH 63
           K      K +     F  +A          K    +N + + +   ++ +          
Sbjct: 2   KMVAKDEKQEKVQKVFDKVA----------KKYDLMNDL-MSFGLHRLWRRALISL--LG 48

Query: 64  PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA-NMKNINIDYRVS 120
              G ++LD+ CG G ++  +A+      V G+D S   + +A+         N+++ V 
Sbjct: 49  IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108

Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNG 162
            AE +   D  FD +     + +V +I   +K    +L   G
Sbjct: 109 DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG 150


>gnl|CDD|30846 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
           metabolites biosynthesis, transport, and catabolism /
           General function prediction only].
          Length = 257

 Score = 52.5 bits (122), Expect = 1e-07
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 66  KGLRILDLGCGGGLLS--EPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCA 122
            GL +LD+GCG G L+    +   GA V G+D S + +A+A+  A    +  +D+ V+ A
Sbjct: 48  GGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA 107

Query: 123 EEIA---ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLA 179
                  E    FD+++++ V+  +      ++    +L   G + +S + R+       
Sbjct: 108 LGGVLPFEDSASFDLVISLLVLHLLPPAK-ALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166

Query: 180 IIGAEYLLQWLPKGTHQYD 198
                +    L +G    +
Sbjct: 167 AALLGFGDPVLERGDILLE 185


>gnl|CDD|145480 pfam02353, CMAS, Cyclopropane-fatty-acyl-phospholipid synthase.
           This family consist of
           Cyclopropane-fatty-acyl-phospholipid synthase or CFA
           synthase EC:2.1.1.79 this enzyme catalyse the reaction:
           S-adenosyl-L-methionine + phospholipid olefinic fatty
           acid <=> S-adenosyl-L-homocysteine + phospholipid
           cyclopropane fatty acid.
          Length = 273

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 24/116 (20%)

Query: 67  GLRILDLGCG-GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANM-----KNINIDYRVS 120
           G+ +LD+GCG GGL+     +    V G       + ++KN   +         +  +V 
Sbjct: 63  GMTLLDIGCGWGGLMRRAAERYDVNVVG-------LTLSKNQYKLARQRVAAEGLQRKV- 114

Query: 121 CAEEI-----AETDEKFDIILNMEVIEHV--DNIPYFIKTCCSLLLSNGLMFISTI 169
              E+      + DE FD I+++ + EHV  +N   F K   +LL   GLM + TI
Sbjct: 115 ---EVLLQDYRDFDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTI 167


>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 319

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 41/175 (23%)

Query: 66  KGLRILDLGCGGGLLSEPMA-----QMGATVTGIDPSTKNIAIAKN----HANMKNINID 116
            G R+L  G  GG+ +   A      +GA VTG+  ST+N  + ++            ID
Sbjct: 143 PGQRVLINGASGGVGT--FAVQIAKALGAHVTGVC-STRNAELVRSLGADEV------ID 193

Query: 117 YRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAM 176
           Y       +    EK+D+I +      V N P+ +      L   G  ++ ++      +
Sbjct: 194 YTTEDFVALTAGGEKYDVIFDA-----VGNSPFSLYRASLALKPGG-RYV-SVGGGPSGL 246

Query: 177 LLAIIGAEYLLQWLPKGTHQYDKFIKP---------TEMECFLAANKVKI-IDRV 221
           LL ++    L   L  G  +   F+            E+   +   K+K  ID V
Sbjct: 247 LLVLLL---LPLTLGGGGRRLKFFLAKPNAEDLEQLAEL---VEEGKLKPVIDSV 295


>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
           structure and biogenesis].
          Length = 198

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 64  PFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122
             +G  +LDLG G G+L+   A +GA  V  +D   + + IA+ +A     ++++ V+  
Sbjct: 43  DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV 102

Query: 123 EEIAETDEKFDIIL 136
            +      KFD ++
Sbjct: 103 SDF---RGKFDTVI 113


>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain.  This domain is
           found in ribosomal RNA small subunit methyltransferase C
           as well as other methyltransferases .
          Length = 170

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 69  RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINID----YRVSCA 122
           ++LDLGCG G+L   +A+      VT +D + + +  A+  AN+    ++    +     
Sbjct: 34  KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESAR--ANLAANGLENGEVFWSDLY 91

Query: 123 EEIAETDEKFD-IILNMEVIEHVDNIPY----FIKTCCSLLLSNGLMFISTINRNLKA 175
             +     KFD II N                FI      L   G ++I   NR+L  
Sbjct: 92  SAV--EPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWI-VANRHLGY 146


>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
           [Translation, ribosomal structure and biogenesis].
          Length = 280

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 25/125 (20%)

Query: 69  RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126
           RILDLG G G ++  +A+ G  A V  +D S   +A+A+ +A  +N  +   V  ++   
Sbjct: 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE-RNGLVRVLVVQSDLFE 171

Query: 127 ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLS--------------NGLMFISTINRN 172
               KFD+I        V N PY       LL                +GL     I   
Sbjct: 172 PLRGKFDLI--------VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE 223

Query: 173 LKAML 177
              +L
Sbjct: 224 APDIL 228


>gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
           ribosomal structure and biogenesis].
          Length = 300

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 61  DTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINIDYRV 119
           +    KG  +LD+GCG G+L+   A++GA  V G+D   + +  A+ +A +  + +  + 
Sbjct: 157 EKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQA 216

Query: 120 SC-AEEIAETDEKFDII 135
                     +  FD+I
Sbjct: 217 KGFLLLEVPENGPFDVI 233


>gnl|CDD|36712 KOG1499, KOG1499, KOG1499, Protein arginine N-methyltransferase
           PRMT1 and related enzymes [Posttranslational
           modification, protein turnover, chaperones,
           Transcription, Signal transduction mechanisms].
          Length = 346

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 42  VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTK- 99
           VR    ++ I+Q+        H FK   +LD+GCG G+LS   A+ GA  V  ++ S+  
Sbjct: 43  VRTLAYRNAILQN-------KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA 95

Query: 100 NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDII 135
           + A      N     I       E+I    EK DII
Sbjct: 96  DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDII 131


>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Translation, ribosomal
           structure and biogenesis].
          Length = 432

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 38  QINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97
           Q+NP   + + +  ++  +          G R+LDL CG G    P+A+    V G++ S
Sbjct: 272 QVNPAVAEKLYETALEWLE-------LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEIS 324

Query: 98  TKNIAIAKNHANMKNI-NIDYRVSCAEEIAE---TDEKFDIIL 136
            + +  A+ +A    I N+++    AEE         K D+++
Sbjct: 325 PEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVV 367


>gnl|CDD|30706 COG0357, GidB, Predicted S-adenosylmethionine-dependent
           methyltransferase involved in bacterial cell division
           [Cell envelope biogenesis, outer membrane].
          Length = 215

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 22/166 (13%)

Query: 8   YTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQ-CKSDDTH-PF 65
            T +  + +  +  +  +W +           N   I+  ++   +H         +   
Sbjct: 16  VTEEQLEKLEAYVELLLKWNK---------AYNLTAIRDPEELWQRHILDSLVLLPYLDG 66

Query: 66  KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIA---IAKNHANMKNINIDYRVS 120
           K  R+LD+G G G    P+A       VT ++   K IA     K    ++N+ I     
Sbjct: 67  KAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEI--VHG 124

Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
            AEE  +  +++D++        V ++   ++ C  LL   G    
Sbjct: 125 RAEEFGQEKKQYDVVT----SRAVASLNVLLELCLPLLKVGGGFLA 166


>gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General
           function prediction only].
          Length = 328

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 65  FKGLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKN-------INI 115
            K   ILDLG G G +S  +       TVT ID S   I +AK +A           I+ 
Sbjct: 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206

Query: 116 DYRVSCAEEIAETDEKFDIIL-NMEVIEHVDN 146
                 ++E    + K D+++ N   I   DN
Sbjct: 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDN 238


>gnl|CDD|114142 pfam05401, NodS, Nodulation protein S (NodS).  This family consists
           of nodulation S (NodS) proteins. The products of the
           rhizobial nodulation genes are involved in the
           biosynthesis of lipochitin oligosaccharides (LCOs),
           which are host-specific signal molecules required for
           nodule formation. NodS is an S-adenosyl-L-methionine
           (SAM)-dependent methyltransferase involved in N
           methylation of LCOs. NodS uses N-deacetylated
           chitooligosaccharides, the products of the NodBC
           proteins, as its methyl acceptors.
          Length = 201

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 71  LDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETD 129
           L++GC  G  +E +A     +T ID   +  AIA+    MK   +I + VS  ++ + T+
Sbjct: 48  LEVGCAAGAFTERLAPYCQRLTVIDVMPE--AIARARLRMKKWSHISWIVSDVQQFS-TN 104

Query: 130 EKFDIILNMEV---IEHVDNIPYFIKTCCSLLLSNG-LMFISTINRN 172
           E FD+I+  EV   +  V  +   ++   S+L  +G L+F S  + N
Sbjct: 105 ELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDGQLVFGSARDAN 151


>gnl|CDD|36485 KOG1271, KOG1271, KOG1271, Methyltransferases [General function
           prediction only].
          Length = 227

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 69  RILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126
           R+LDLG G G L   +A+ G    +TG+D S K + +A+N A     + + R    +   
Sbjct: 70  RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129

Query: 127 ETDE--KFDIILN 137
                 +FD++L+
Sbjct: 130 PDFLSGQFDLVLD 142


>gnl|CDD|38220 KOG3010, KOG3010, KOG3010, Methyltransferase [General function
           prediction only].
          Length = 261

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 70  ILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--E 127
             D+G G G  +  +A+    V   D S   + +AK H  +   +    +S  E +    
Sbjct: 37  AWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG 96

Query: 128 TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMF 165
            +E  D+I   + + H  ++  F K    +L  +G + 
Sbjct: 97  GEESVDLITAAQAV-HWFDLERFYKEAYRVLRKDGGLI 133


>gnl|CDD|33863 COG4106, Tam, Trans-aconitate methyltransferase [General function
           prediction only].
          Length = 257

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 53  QHFQCKSDDTHPFKGL----------RILDLGCGGGLLSEPMAQM--GATVTGIDPSTKN 100
           Q+ Q + + T P + L          R++DLGCG G  +E +A+    A +TGID S   
Sbjct: 7   QYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM 66

Query: 101 IAIAKNH 107
           +A A   
Sbjct: 67  LAKAAQR 73


>gnl|CDD|32588 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 209

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 64  PFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNH-ANMKNINIDYRVSCA 122
              G R+L++G G G  +  +A++   V  I+   +    A+ +   +   N+  R    
Sbjct: 70  LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129

Query: 123 EEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
            +    +  +D I+   V      +P   +     L   G + I
Sbjct: 130 SKGWPEEAPYDRII---VTAAAPEVP---EALLDQLKPGGRLVI 167


>gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
           structure and biogenesis].
          Length = 300

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)

Query: 51  IMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA 108
           +++          P  G ++LDLGCG G+L   +A+    A +T +D + + +  A+   
Sbjct: 150 LLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR--K 200

Query: 109 NMKNINIDYRVSCAEEIAE-TDEKFD-IILN---MEVIEHVDNIPY-FIKTCCSLLLSNG 162
           N+    ++     A  + E  + KFD II N         V ++    I      L   G
Sbjct: 201 NLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260

Query: 163 LMFISTINRNLKA 175
            ++I   NR+L  
Sbjct: 261 ELWI-VANRHLPY 272


>gnl|CDD|112651 pfam03848, TehB, Tellurite resistance protein TehB. 
          Length = 192

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 69  RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
           + LDLGCG G  S  ++ +G  VT +D +  +IA  ++    +N++I   +      A  
Sbjct: 33  KALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLDIPTALYDINS-ASI 91

Query: 129 DEKFDIILNMEVIEHV--DNIPYFIK 152
           DE +D IL+  V+  +  + IP  I 
Sbjct: 92  DENYDFILSTVVLMFLQAERIPAIIA 117


>gnl|CDD|36754 KOG1541, KOG1541, KOG1541, Predicted protein carboxyl methylase
           [General function prediction only].
          Length = 270

 Score = 36.9 bits (85), Expect = 0.006
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 45  KYIQDKIMQHFQ-------CKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97
           KY Q+  +   Q        +       K   ILD+GCG GL    ++  G    G+D S
Sbjct: 22  KYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS 81

Query: 98  TKNIAIA 104
              +  A
Sbjct: 82  PSMLEQA 88


>gnl|CDD|33685 COG3897, COG3897, Predicted methyltransferase [General function
           prediction only].
          Length = 218

 Score = 36.1 bits (83), Expect = 0.011
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 61  DTHP--FKGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANMKNINI 115
           D HP   +G R+LDLG G GL++   A+ GA       IDP        + +A    ++I
Sbjct: 72  DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL--EQAIRLNAAANGVSI 129

Query: 116 DYRVSCAEEIAETDEKFDIILNMEVI----EHVDNIPYF 150
            +      ++  +   FD++L  ++     E    IP+ 
Sbjct: 130 LF---THADLIGSPPAFDLLLAGDLFYNHTEADRLIPWK 165


>gnl|CDD|147424 pfam05219, DREV, DREV methyltransferase.  This family contains DREV
           protein homologues from several eukaryotes. The function
           of this protein is unknown. However, these proteins
           appear to be related to other methyltransferases
           (Bateman A pers obs).
          Length = 265

 Score = 35.6 bits (82), Expect = 0.013
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 69  RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
            +LDLG G G ++  MA     V   + S        +    KN    Y V    E  ET
Sbjct: 97  TLLDLGAGDGEITLRMAPTFEEVYATELSWTMR----DRLKKKN----YNVLTEIEWQET 148

Query: 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169
           D   D+IL + +++   +    ++     L  NG + ++ +
Sbjct: 149 DVNLDLILCLNLLDRCFDPFKLLEDIHLALAPNGRVIVALV 189


>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
          Length = 187

 Score = 35.6 bits (82), Expect = 0.015
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 64  PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNI-AIAKNHANMKNINIDYRVS 120
           P  G R+ D+G G G ++   A  G    V  I+   + +  I +N A     N++    
Sbjct: 32  PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91

Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170
            A E        D I     I    NI   ++     L   G +  + I 
Sbjct: 92  DAPEALPDLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVANAIT 137


>gnl|CDD|36713 KOG1500, KOG1500, KOG1500, Protein arginine N-methyltransferase
           CARM1 [Posttranslational modification, protein turnover,
           chaperones, Transcription].
          Length = 517

 Score = 35.1 bits (80), Expect = 0.017
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 20/111 (18%)

Query: 36  LHQINP----VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT- 90
             Q N     VR    Q  I+++    SD    F+   +LD+G G G+LS   AQ GA  
Sbjct: 150 SQQQNMMQDYVRTGTYQRAILEN---HSD----FQDKIVLDVGAGSGILSFFAAQAGAKK 202

Query: 91  VTGIDPST----KNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILN 137
           V  ++ S         +A N+   +   I  ++   E+I E  EK D+I++
Sbjct: 203 VYAVEASEMAQYARKLVASNNLADRITVIPGKI---EDI-ELPEKVDVIIS 249


>gnl|CDD|36753 KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis
           methyltransferase COQ5 [Coenzyme transport and
           metabolism].
          Length = 296

 Score = 34.5 bits (79), Expect = 0.030
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 63  HPFKGLRILDLGCGGGLLS--------EPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN 114
            P KG+++LD+  G G ++               + VT +D +   +A+ K  A  + + 
Sbjct: 97  GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156

Query: 115 IDYRV----SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
              RV      AE++   D+ FD       I +V +I   ++    +L   G    
Sbjct: 157 ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212


>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
          Length = 233

 Score = 34.0 bits (78), Expect = 0.047
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 64  PFKGLRILDLGCGGG----LLSEPMAQMGATVTGIDPSTKNIAIAKNHA-NMKNINIDYR 118
             +G + LD+  G G     LS+     G  V G+D +   +   +  A      NI++ 
Sbjct: 45  VKRGNKFLDVAGGTGDWTFGLSDSAGSSG-KVVGLDINENMLKEGEKKAKEEGKYNIEFL 103

Query: 119 VSCAEEIAETDEKFDII 135
              AEE+   D+ FDI+
Sbjct: 104 QGNAEELPFEDDSFDIV 120


>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA
           dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase,
           and other MDR family members.  This group contains
           enzymes of the zinc-dependent alcohol dehydrogenase
           family, including members (aka MDR) identified as
           6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and
           N-benzyl-3-pyrrolidinol dehydrogenase.
           6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase
           catalyzes the conversion of
           6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to
           6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This
           group displays the characteristic catalytic and
           structural zinc sites of the zinc-dependent alcohol
           dehydrogenases. NAD(P)(H)-dependent oxidoreductases are
           the major enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation. ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide. A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone. The N-terminal
           catalytic domain has a distant homology to GroES. These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. NAD(H)-binding occurs in the cleft
           between the catalytic  and coenzyme-binding domains at
           the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine,
           the ribose of NAD, a serine, then the alcohol, which
           allows the transfer of a hydride to NAD+, creating NADH
           and a zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 338

 Score = 33.4 bits (77), Expect = 0.061
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 66  KGLRILDLGCGG-GLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123
            G  +L +G GG GL +  +A+ MGA V  +D   + + +AK     + +N        +
Sbjct: 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDK 224

Query: 124 EIAETDEKFDIIL 136
           + A     FD+I 
Sbjct: 225 KAAGLGGGFDVIF 237


>gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and
           related tRNA-modifying enzymes [Translation, ribosomal
           structure and biogenesis].
          Length = 534

 Score = 33.4 bits (76), Expect = 0.068
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 29  PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG 88
           P   F+       V    I +         +D T       +LD+ CG G +   +A+  
Sbjct: 357 PGAFFQTNTSAAEVLYSTIGE----WAGLPADKT-------LLDVCCGTGTIGLALARGV 405

Query: 89  ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEK 131
             V G++ S   +  A+ +A +  I N  + V  AE++  +   
Sbjct: 406 KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT 449


>gnl|CDD|39190 KOG3987, KOG3987, KOG3987, Uncharacterized conserved protein
           DREV/CGI-81 [Function unknown].
          Length = 288

 Score = 33.1 bits (75), Expect = 0.085
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 69  RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
            +LDLG G G ++  MA     V   + S       ++    KN    Y V    E  +T
Sbjct: 115 TLLDLGAGDGEITLRMAPTFEEVYATELSWT----MRDRLKKKN----YNVLTEIEWLQT 166

Query: 129 DEKFDIILNMEVIEHVDN 146
           D K D+IL + +++   +
Sbjct: 167 DVKLDLILCLNLLDRCFD 184


>gnl|CDD|38630 KOG3420, KOG3420, KOG3420, Predicted RNA methylase [Translation,
           ribosomal structure and biogenesis].
          Length = 185

 Score = 31.9 bits (72), Expect = 0.18
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 65  FKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDY 117
            +G ++ DLGCG G+LS   +     +V G D   + + I   +A    + ID 
Sbjct: 47  IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDL 100


>gnl|CDD|114449 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT).  This
           family consists of thiopurine S-methyltransferase
           proteins from both eukaryotes and prokaryotes.
           Thiopurine S-methyltransferase (TPMT) is a cytosolic
           enzyme that catalyses S-methylation of aromatic and
           heterocyclic sulfhydryl compounds, including anticancer
           and immunosuppressive thiopurines.
          Length = 203

 Score = 31.6 bits (72), Expect = 0.22
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 36  LHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGID 95
              +NP+        +++H+    D  +   GLR+L   CG  L    +A+ G  V G++
Sbjct: 4   QEGVNPL--------LVRHW----DALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVE 51

Query: 96  PSTKNIAIAK 105
            S   +A+ K
Sbjct: 52  IS--ELAVEK 59


>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
           recombination, and repair].
          Length = 187

 Score = 31.4 bits (71), Expect = 0.22
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 65  FKGLRILDLGCGGGLLS-EPMAQMGATVTGIDPSTK-------NIAIAKNHANMKNINID 116
            +G R+LDL  G G L  E +++  A V  ++   K       N+         + +  D
Sbjct: 42  IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101

Query: 117 YRVSCAEEIAETDEKFDIIL 136
                A +   T E FD++ 
Sbjct: 102 --ALRALKQLGTREPFDLVF 119


>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
           prediction only].
          Length = 248

 Score = 31.4 bits (71), Expect = 0.25
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 62  THPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119
               K  RILDLG G G L   +AQ    A + G++   +   +A+   N+    ++ R+
Sbjct: 40  APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ--RNVALNPLEERI 97

Query: 120 SCAEE------IAETDEKFDIILNMEVIEHVDNIPYF 150
              E        A     FD+I        + N PYF
Sbjct: 98  QVIEADIKEFLKALVFASFDLI--------ICNPPYF 126


>gnl|CDD|145605 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA.  This is a
           family of 2-dehydropantoate 2-reductases also known as
           ketopantoate reductases, EC:1.1.1.169. The reaction
           catalysed by this enzyme is: (R)-pantoate + NADP(+) <=>
           2-dehydropantoate + NADPH. AbpA catalyses the NADPH
           reduction of ketopantoic acid to pantoic acid in the
           alternative pyrimidine biosynthetic (APB) pathway. ApbA
           and PanE are allelic. ApbA, the ketopantoate reductase
           enzyme is required for the synthesis of thiamine via the
           APB biosynthetic pathway.
          Length = 150

 Score = 31.4 bits (72), Expect = 0.25
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 70  ILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE 127
           I  LG G  G L    +A+ G  VT I       AI +N   + +   +  V      + 
Sbjct: 1   IAILGAGAVGSLYGARLARAGHDVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSA 60

Query: 128 T--DEKFDIIL-------NMEVIEHVDNIPYFIKTCCSLLLSNGL 163
           +      D+++         E +E +   P        LLL NGL
Sbjct: 61  SEELGPADLVIVAVKAYQTAEALEDLA--PLLGPNTVVLLLQNGL 103


>gnl|CDD|32589 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
           related methyltransferases [Translation, ribosomal
           structure and biogenesis].
          Length = 256

 Score = 31.4 bits (71), Expect = 0.26
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 65  FKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSC 121
             G R+L+ G G G L+  +A+       VT  +        A+   N+    +  RV+ 
Sbjct: 93  SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARE--NLSEFGLGDRVTL 150

Query: 122 -AEEIAE--TDEKFD-IILNM----EVIEHVDNI 147
              ++ E   +E  D + L++     V+EHV + 
Sbjct: 151 KLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDA 184


>gnl|CDD|110158 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase (PCMT). 
          Length = 205

 Score = 30.8 bits (70), Expect = 0.37
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 66  KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINID 116
            G+R+L++G G G L+   A+M      V  I+   + + IA+   N++ + ++
Sbjct: 73  PGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARR--NLEKLGLE 124


>gnl|CDD|31989 COG1804, CaiB, Predicted acyl-CoA transferases/carnitine
          dehydratase [Energy production and conversion].
          Length = 396

 Score = 30.6 bits (69), Expect = 0.43
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 64 PFKGLRILDLG--CGGGLLSEPMAQMGATVTGIDP 96
          P +GLR++DL     G    + +A +GA V  ++ 
Sbjct: 7  PLEGLRVIDLAHVLAGPFAGQLLADLGAEVIKVER 41


>gnl|CDD|37941 KOG2730, KOG2730, KOG2730, Methylase [General function prediction
           only].
          Length = 263

 Score = 30.0 bits (67), Expect = 0.58
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 39  INPVRI-KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97
           + P +I ++I ++++     +           I+D  CG G  +   A  G  V  ID  
Sbjct: 76  VTPEKIAEHIANRVVACMNAE----------VIVDAFCGVGGNTIQFALQGPYVIAIDID 125

Query: 98  TKNIAIAKNHANMKNI 113
              IA A+++A +  +
Sbjct: 126 PVKIACARHNAEVYGV 141


>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family.  This
           group contains members identified as related to
           zinc-dependent alcohol dehydrogenase and other members
           of the MDR family. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group includes
           various activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. Active site zinc has a
           catalytic role, while structural zinc aids in stability.
            ADH-like proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and generally have 2 tightly bound zinc atoms per
           subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 337

 Score = 29.8 bits (68), Expect = 0.79
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 62  THPFKGLRILDLGCGG-GLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119
                G  +L +G G  GL    +A+  GA V  +D   + +  A+       IN+    
Sbjct: 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVG-DE 213

Query: 120 SCAEEIAE-TD-EKFDII 135
             A  + E TD E  D++
Sbjct: 214 DVAARLRELTDGEGADVV 231


>gnl|CDD|36874 KOG1661, KOG1661, KOG1661, Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase [Posttranslational modification,
           protein turnover, chaperones].
          Length = 237

 Score = 29.5 bits (66), Expect = 0.86
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 61  DTHPFKGLRILDLGCGGGLLSEPMAQM----GATVTGID 95
           D H   G   LD+G G G L+   A+M    G  V GI+
Sbjct: 77  DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIE 115


>gnl|CDD|39160 KOG3957, KOG3957, KOG3957, Predicted L-carnitine
           dehydratase/alpha-methylacyl-CoA racemase [Lipid
           transport and metabolism].
          Length = 387

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 8/45 (17%)

Query: 63  HPFKGLRILDLGCGGGLLSEPMAQM-----GATVTGIDPSTKNIA 102
            P  G+++L+L    GL   P   M     GA VT +D    N  
Sbjct: 3   MPLSGIKVLEL---SGLAPGPFCGMVLADFGAEVTKVDRKNSNDE 44


>gnl|CDD|38913 KOG3709, KOG3709, KOG3709, PACS-1 cytosolic sorting protein
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 778

 Score = 28.5 bits (63), Expect = 1.6
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 56  QCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI 115
           + K  +  P  GLR  DL  G   L+  M Q G     ++P+++N+ +   +   K + +
Sbjct: 109 RKKFKNRLP-GGLR--DLAVGNINLTYIMQQGGLREIQLNPTSENVELKGRNFKQKIVAL 165

Query: 116 DYRVSCAEEIAETDEKFDI 134
             R S + EI    +   I
Sbjct: 166 LKRFSVSPEIEPHMDSISI 184


>gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase. 
          Length = 258

 Score = 28.8 bits (65), Expect = 1.7
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 38/124 (30%)

Query: 39  INPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPST 98
            N   I  I DK            +  +   +L++G G G L+E +A+    V  I+   
Sbjct: 14  TNKKVINRIVDKA-----------NLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDP 62

Query: 99  KNIAIAKN----HANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH-----VDNIPY 149
           +     +     H N++ ++ D                   L     +H     V NIPY
Sbjct: 63  RLAKRLQKKLALHPNVEVVHQD------------------FLKFSFPKHEPFLVVGNIPY 104

Query: 150 FIKT 153
            I T
Sbjct: 105 NITT 108


>gnl|CDD|38131 KOG2920, KOG2920, KOG2920, Predicted methyltransferase [General
           function prediction only].
          Length = 282

 Score = 28.4 bits (63), Expect = 2.0
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 55  FQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI 113
            + +      F G R+L+LGCG  L        GA +V   D + + + +      +   
Sbjct: 105 LKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRL------VTLP 158

Query: 114 NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNI 147
           NI    S A    + + K D ILN  + + V N 
Sbjct: 159 NILVN-SHAGVEEKENHKVDEILNSLLSDGVFNH 191


>gnl|CDD|145904 pfam03003, DUF230, Poxvirus proteins of unknown function. 
          Length = 127

 Score = 28.4 bits (64), Expect = 2.0
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 100 NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLL 159
           NI+I   + N+KN   D   +C   +    +         V+    +IP+ +     L+L
Sbjct: 66  NISI--GNLNLKNSKSDLINNCGSNLNSISDVNQGK----VLNQNIDIPFNLFPSFILIL 119

Query: 160 SNGLMFISTI 169
           +  L  +  +
Sbjct: 120 A--LAVLFLL 127


>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like,
           2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and
           other MDR family members.  This subgroup of the medium
           chain dehydrogenases/reductase (MDR)/zinc-dependent
           alcohol dehydrogenase-like family has members identified
           as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A
           dehydrogenase and alcohol dehydrogenases. The medium
           chain dehydrogenases/reductase (MDR)/zinc-dependent
           alcohol dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.
          Length = 277

 Score = 28.0 bits (63), Expect = 2.4
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 61  DTHPFKGLRILDLGCG--GGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDY 117
           D  P  G R+  +G G  G L ++     GA  V G+DP      +A+            
Sbjct: 92  DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL------GPAD 145

Query: 118 RVSCAEEIAETDEKFDIIL 136
            V+            D+++
Sbjct: 146 PVAADTADEIGGRGADVVI 164


>gnl|CDD|36714 KOG1501, KOG1501, KOG1501, Arginine N-methyltransferase [General
           function prediction only].
          Length = 636

 Score = 28.1 bits (62), Expect = 2.7
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 41/196 (20%)

Query: 70  ILDLGCGGGLLS-----------------EPMAQMGATVTGIDPSTKNIAIAKNHANMKN 112
           +LD+G G GLLS                 +PM  +   +   +  +  I +    +    
Sbjct: 70  VLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST--- 126

Query: 113 INIDYRVSCAEEIAETDEKFDIILNME-------------VIEHVDNIPYFIKTCCSLLL 159
             +    S   +IA   E FD  L  E             ++++   +PY     C L+ 
Sbjct: 127 -EVKVGGSSRADIAVR-EDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVE 184

Query: 160 SNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219
           S  L  ++ +  N       +      L+         D   +  +        + K++ 
Sbjct: 185 STFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQD--SQLVDA----IEKEFKLLS 238

Query: 220 RVGVVYNVFCNKWQLS 235
             G ++     +W  S
Sbjct: 239 SEGTIFYSDFPRWIDS 254


>gnl|CDD|111429 pfam02527, GidB, rRNA small subunit methyltransferase G.  This is a
           family of bacterial glucose inhibited division proteins
           these are probably involved in the regulation of cell
           devision. GidB has been shown to be a methyltransferase
           G specific to the rRNA small subunit. Previously
           identified as a glucose-inhibited division protein B
           that appears to be present and in a single copy in all
           complete eubacterial genomes so far sequenced. GidB
           specifically methylates the N7 position of a guanosine
           in 16S rRNA.
          Length = 184

 Score = 27.6 bits (62), Expect = 3.2
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 70  ILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKN-HANMKNINIDYRVSCAEEIA 126
           + D+G G G    P+A       +T ++   K I   +     +   N+    + AEE  
Sbjct: 52  VADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ 111

Query: 127 ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
              E++D+I        V ++    +    LL   G    
Sbjct: 112 HE-EQYDVIT----SRAVASLNELTEWALPLLKPGGYFLA 146


>gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing
           protein/polyadenylated-RNA export factor [RNA processing
           and modification].
          Length = 591

 Score = 27.7 bits (61), Expect = 3.5
 Identities = 9/46 (19%), Positives = 15/46 (32%)

Query: 30  TGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGC 75
              F  + + N   ++ I DK+   F    D   P      L+   
Sbjct: 343 NPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIA 388


>gnl|CDD|33832 COG4074, Mth, H2-forming N5,N10-methylenetetrahydromethanopterin
           dehydrogenase [Energy production and conversion].
          Length = 343

 Score = 27.3 bits (60), Expect = 4.0
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 179 AIIGAEYLLQWLPKGTHQ---YDKFIKPTEMECFLA 211
           A+  A+ ++ WLPKG  Q     KFI        + 
Sbjct: 136 AVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVT 171


>gnl|CDD|38151 KOG2940, KOG2940, KOG2940, Predicted methyltransferase [General
           function prediction only].
          Length = 325

 Score = 27.3 bits (60), Expect = 4.6
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 70  ILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
             D+GC  G +   +   G   +  +D S   I   ++ A   +I   Y V   E +   
Sbjct: 76  AFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFK 134

Query: 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169
           +   D+I++   +   +++P  +  C   L  +GL FI+++
Sbjct: 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGL-FIASM 174


>gnl|CDD|30619 COG0270, Dcm, Site-specific DNA methylase [DNA replication,
           recombination, and repair].
          Length = 328

 Score = 27.0 bits (59), Expect = 4.7
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 68  LRILDLGCGGGLLSEPMAQMGATVTG---IDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124
           ++++DL  G G LS    + G  +     IDP         N  +   I  D +    E 
Sbjct: 4   MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVAT-YKANFPHGDIILGDIKELDGEA 62

Query: 125 IAETDEKFDIILN 137
           + ++D   D+++ 
Sbjct: 63  LRKSD--VDVLIG 73


>gnl|CDD|30569 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
           methyltransferase [General function prediction only].
          Length = 227

 Score = 27.2 bits (60), Expect = 4.9
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 70  ILDLGCGGGLLSEPMAQMGATVT--GIDPSTKNIAIAKNHA---NMKNINI 115
           +L++G G G     MA+        GI+     +A A        +KN+ +
Sbjct: 52  VLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRL 102


>gnl|CDD|38009 KOG2798, KOG2798, KOG2798, Putative trehalase [Carbohydrate
           transport and metabolism].
          Length = 369

 Score = 26.8 bits (59), Expect = 5.7
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 45  KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTG 93
           K I +++   F            +RIL  G G G L+  +A +G    G
Sbjct: 132 KPIIEELNSLF---PSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQG 177


>gnl|CDD|38110 KOG2899, KOG2899, KOG2899, Predicted methyltransferase [General
           function prediction only].
          Length = 288

 Score = 26.9 bits (59), Expect = 6.2
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 65  FKGLRILDLGCGGGLLSEPMAQ--MGATVTGIDPSTKNIAIAKNH 107
           F+  + LD+GC  G L+  +A+      + G+D     I  A+  
Sbjct: 57  FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKE 101


>gnl|CDD|37572 KOG2361, KOG2361, KOG2361, Predicted methyltransferase [General
           function prediction only].
          Length = 264

 Score = 26.5 bits (58), Expect = 7.5
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 45  KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT----VTGIDPSTKN 100
            ++  +  +                IL++GCG G    P+ +        V   D S + 
Sbjct: 55  NWLLREFPELLPVDEKSA-----ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109

Query: 101 IAIAKNHA--NMKNINIDYRVSCAEEIAETDEK--FDIILNMEVIE--HVDNIPYFIKTC 154
           I + K  +  +   +        +  + E  E+   DII  + V+   H + +   IK  
Sbjct: 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNL 169

Query: 155 CSLLLSNGLMFISTINRNLKAMLLAI 180
            +LL   G +      R   A L   
Sbjct: 170 RTLLKPGGSLLFRDYGRYDLAQLRFK 195


>gnl|CDD|34764 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
           subunit [Translation, ribosomal structure and
           biogenesis].
          Length = 591

 Score = 26.3 bits (57), Expect = 8.2
 Identities = 10/54 (18%), Positives = 17/54 (31%)

Query: 64  PFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDY 117
           P   L  + L CGG ++  P          +D    +  + +     K     Y
Sbjct: 363 PGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVEGRTY 416


>gnl|CDD|36637 KOG1423, KOG1423, KOG1423, Ras-like GTPase ERA [Cell cycle control,
           cell division, chromosome partitioning, Signal
           transduction mechanisms].
          Length = 379

 Score = 26.1 bits (57), Expect = 9.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 184 EYLLQWLPKGTHQYDKFIKPTEMECFLAANKV--KIIDRV--GVVYNVFCN 230
           +YL+   P G  +Y   I   E   FL +  V  K++D +   V YN+   
Sbjct: 264 QYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVR 314


>gnl|CDD|39789 KOG4589, KOG4589, KOG4589, Cell division protein FtsJ [Cell cycle
           control, cell division, chromosome partitioning].
          Length = 232

 Score = 26.1 bits (57), Expect = 9.5
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 46  YIQDKIMQHFQCKS-------DDTHPF--KGLRILDLGCGGGLLSEPMAQM---GATVTG 93
           Y++   +Q+++ +S       +D + F      +LD G   G  S+   Q       V G
Sbjct: 40  YVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLG 99

Query: 94  ID 95
           +D
Sbjct: 100 VD 101


>gnl|CDD|145073 pfam01728, FtsJ, FtsJ-like methyltransferase.  This family consists
           of FtsJ from various bacterial and archaeal sources FtsJ
           is a methyltransferase, but actually has no effect on
           cell division. FtsJ's substrate is the 23S rRNA. The 1.5
           A crystal structure of FtsJ in complex with its cofactor
           S-adenosylmethionine revealed that FtsJ has a
           methyltransferase fold. This family also includes the N
           terminus of flaviviral NS5 protein. It has been
           hypothesized that the N-terminal domain of NS5 is a
           methyltransferase involved in viral RNA capping.
          Length = 176

 Score = 26.0 bits (58), Expect = 9.5
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 14/96 (14%)

Query: 60  DDTHPFK--GLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKNINI 115
           D+    K  G  +LDLG   G  S+ + + GA   V  +D     +   +    ++  +I
Sbjct: 13  DERFGLKPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVD--LGPMKPIQGVTFLRG-DI 69

Query: 116 DYRVSCAEEIAET-DEKFDIIL-----NMEVIEHVD 145
                  E++ E    K D++L     N+  +E+ D
Sbjct: 70  -TDPETLEKLLELLPGKVDLVLCDGAPNVSGLENTD 104


>gnl|CDD|30539 COG0190, FolD, 5,10-methylene-tetrahydrofolate
           dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
           [Coenzyme metabolism].
          Length = 283

 Score = 26.3 bits (58), Expect = 9.6
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 63  HPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIA-IAKNH 107
              +G  ++ +G    ++ +P+A +     ATVT     TK++A I KN 
Sbjct: 152 IDLRGKNVVVVG-RSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,118,059
Number of extensions: 161989
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 72
Length of query: 254
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 162
Effective length of database: 4,275,709
Effective search space: 692664858
Effective search space used: 692664858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)