RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9
3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(254 letters)
>gnl|CDD|32409 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 271 bits (694), Expect = 2e-73
Identities = 116/234 (49%), Positives = 161/234 (68%), Gaps = 9/234 (3%)
Query: 12 NQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRIL 71
+ +++F +AS WW+P G+FKPLH+INP+R+ YI++ F GLR+L
Sbjct: 13 DYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD--------LPGLRVL 64
Query: 72 DLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131
D+GCGGG+LSEP+A++GA+VTGID S K I +AK HA +NIDYR + E++A +
Sbjct: 65 DVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQ 124
Query: 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLP 191
FD++ MEV+EHV + F++ C L+ G++F+STINR LKA LLAIIGAEY+L+ +P
Sbjct: 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVP 184
Query: 192 KGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMV 245
KGTH Y KFIKP E+ +L +KIIDR G+ YN N W+LS ++ VNYMV
Sbjct: 185 KGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNSWKLS-NDVSVNYMV 237
>gnl|CDD|36484 KOG1270, KOG1270, KOG1270, Methyltransferases [Coenzyme transport
and metabolism].
Length = 282
Score = 217 bits (554), Expect = 2e-57
Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 5/246 (2%)
Query: 6 PNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPF 65
+ T+ + D + +F +A WW+ G PLH +N R+ +I+D + + + P
Sbjct: 29 ASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPL 88
Query: 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANM---KNINIDYRVSCA 122
G++ILD+GCGGGLLSEP+A++GA VTGID S + +A H M I YR+
Sbjct: 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE 148
Query: 123 EEIAETD-EKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAII 181
+ E KFD ++ EV+EHV + F+ +LL NG +FI+TINR + + I
Sbjct: 149 DTDVEGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIF 208
Query: 182 GAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDV 241
AE +L+ +PKGTH ++KFI P E+ L AN ++ D VG VYN +W S KN +
Sbjct: 209 LAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYNPISGQWLWS-KNTSL 267
Query: 242 NYMVLG 247
NY +
Sbjct: 268 NYGIKA 273
>gnl|CDD|32411 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 66.4 bits (162), Expect = 7e-12
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 66 KGLRILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124
G+ +LD+GCG G L+ A+ G TV G+ S + +A A+ + + + V ++
Sbjct: 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR-LQD 130
Query: 125 IAETDEKFDIILNMEVIEHV--DNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180
+ +E FD I+++ + EHV +N F K +LL G M + +I +
Sbjct: 131 YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFP 188
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.)..
Length = 107
Score = 62.4 bits (152), Expect = 1e-10
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 69 RILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAK-NHANMKNINIDYRVSCAEEIA 126
R+LDLGCG G L+ +A GA VTG+D S + +A+ A + N++ AEE+
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 127 ET-DEKFD-IILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167
DE FD II + + V+++ F++ LL G++ ++
Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
>gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 56.5 bits (136), Expect = 6e-09
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDY-RV 119
D PF+ R+LDLGCG GL E + M +TG+D S +A A Y +
Sbjct: 122 DLGPFR--RMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG-------LYDTL 172
Query: 120 SCAEEIA----ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167
AE + T E+FD+I+ +V+ ++ + LL GL S
Sbjct: 173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224
>gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 53.0 bits (127), Expect = 9e-08
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 4 KYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTH 63
K K + F +A K +N + + + ++ +
Sbjct: 2 KMVAKDEKQEKVQKVFDKVA----------KKYDLMNDL-MSFGLHRLWRRALISL--LG 48
Query: 64 PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA-NMKNINIDYRVS 120
G ++LD+ CG G ++ +A+ V G+D S + +A+ N+++ V
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108
Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNG 162
AE + D FD + + +V +I +K +L G
Sbjct: 109 DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG 150
>gnl|CDD|30846 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 52.5 bits (122), Expect = 1e-07
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 66 KGLRILDLGCGGGLLS--EPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCA 122
GL +LD+GCG G L+ + GA V G+D S + +A+A+ A + +D+ V+ A
Sbjct: 48 GGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA 107
Query: 123 EEIA---ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLA 179
E FD+++++ V+ + ++ +L G + +S + R+
Sbjct: 108 LGGVLPFEDSASFDLVISLLVLHLLPPAK-ALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
Query: 180 IIGAEYLLQWLPKGTHQYD 198
+ L +G +
Sbjct: 167 AALLGFGDPVLERGDILLE 185
>gnl|CDD|145480 pfam02353, CMAS, Cyclopropane-fatty-acyl-phospholipid synthase.
This family consist of
Cyclopropane-fatty-acyl-phospholipid synthase or CFA
synthase EC:2.1.1.79 this enzyme catalyse the reaction:
S-adenosyl-L-methionine + phospholipid olefinic fatty
acid <=> S-adenosyl-L-homocysteine + phospholipid
cyclopropane fatty acid.
Length = 273
Score = 49.6 bits (119), Expect = 9e-07
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 24/116 (20%)
Query: 67 GLRILDLGCG-GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANM-----KNINIDYRVS 120
G+ +LD+GCG GGL+ + V G + ++KN + + +V
Sbjct: 63 GMTLLDIGCGWGGLMRRAAERYDVNVVG-------LTLSKNQYKLARQRVAAEGLQRKV- 114
Query: 121 CAEEI-----AETDEKFDIILNMEVIEHV--DNIPYFIKTCCSLLLSNGLMFISTI 169
E+ + DE FD I+++ + EHV +N F K +LL GLM + TI
Sbjct: 115 ---EVLLQDYRDFDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTI 167
>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 45.3 bits (108), Expect = 2e-05
Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 41/175 (23%)
Query: 66 KGLRILDLGCGGGLLSEPMA-----QMGATVTGIDPSTKNIAIAKN----HANMKNINID 116
G R+L G GG+ + A +GA VTG+ ST+N + ++ ID
Sbjct: 143 PGQRVLINGASGGVGT--FAVQIAKALGAHVTGVC-STRNAELVRSLGADEV------ID 193
Query: 117 YRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAM 176
Y + EK+D+I + V N P+ + L G ++ ++ +
Sbjct: 194 YTTEDFVALTAGGEKYDVIFDA-----VGNSPFSLYRASLALKPGG-RYV-SVGGGPSGL 246
Query: 177 LLAIIGAEYLLQWLPKGTHQYDKFIKP---------TEMECFLAANKVKI-IDRV 221
LL ++ L L G + F+ E+ + K+K ID V
Sbjct: 247 LLVLLL---LPLTLGGGGRRLKFFLAKPNAEDLEQLAEL---VEEGKLKPVIDSV 295
>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 44.8 bits (106), Expect = 2e-05
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122
+G +LDLG G G+L+ A +GA V +D + + IA+ +A ++++ V+
Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV 102
Query: 123 EEIAETDEKFDIIL 136
+ KFD ++
Sbjct: 103 SDF---RGKFDTVI 113
>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 44.9 bits (107), Expect = 2e-05
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 69 RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINID----YRVSCA 122
++LDLGCG G+L +A+ VT +D + + + A+ AN+ ++ +
Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESAR--ANLAANGLENGEVFWSDLY 91
Query: 123 EEIAETDEKFD-IILNMEVIEHVDNIPY----FIKTCCSLLLSNGLMFISTINRNLKA 175
+ KFD II N FI L G ++I NR+L
Sbjct: 92 SAV--EPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWI-VANRHLGY 146
>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 43.4 bits (102), Expect = 6e-05
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 25/125 (20%)
Query: 69 RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126
RILDLG G G ++ +A+ G A V +D S +A+A+ +A +N + V ++
Sbjct: 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE-RNGLVRVLVVQSDLFE 171
Query: 127 ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLS--------------NGLMFISTINRN 172
KFD+I V N PY LL +GL I
Sbjct: 172 PLRGKFDLI--------VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE 223
Query: 173 LKAML 177
+L
Sbjct: 224 APDIL 228
>gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 43.0 bits (101), Expect = 8e-05
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINIDYRV 119
+ KG +LD+GCG G+L+ A++GA V G+D + + A+ +A + + + +
Sbjct: 157 EKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQA 216
Query: 120 SC-AEEIAETDEKFDII 135
+ FD+I
Sbjct: 217 KGFLLLEVPENGPFDVI 233
>gnl|CDD|36712 KOG1499, KOG1499, KOG1499, Protein arginine N-methyltransferase
PRMT1 and related enzymes [Posttranslational
modification, protein turnover, chaperones,
Transcription, Signal transduction mechanisms].
Length = 346
Score = 42.2 bits (99), Expect = 1e-04
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTK- 99
VR ++ I+Q+ H FK +LD+GCG G+LS A+ GA V ++ S+
Sbjct: 43 VRTLAYRNAILQN-------KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA 95
Query: 100 NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDII 135
+ A N I E+I EK DII
Sbjct: 96 DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDII 131
>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 40.3 bits (94), Expect = 6e-04
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 38 QINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97
Q+NP + + + ++ + G R+LDL CG G P+A+ V G++ S
Sbjct: 272 QVNPAVAEKLYETALEWLE-------LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEIS 324
Query: 98 TKNIAIAKNHANMKNI-NIDYRVSCAEEIAE---TDEKFDIIL 136
+ + A+ +A I N+++ AEE K D+++
Sbjct: 325 PEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVV 367
>gnl|CDD|30706 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 39.9 bits (93), Expect = 7e-04
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 22/166 (13%)
Query: 8 YTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQ-CKSDDTH-PF 65
T + + + + + +W + N I+ ++ +H +
Sbjct: 16 VTEEQLEKLEAYVELLLKWNK---------AYNLTAIRDPEELWQRHILDSLVLLPYLDG 66
Query: 66 KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIA---IAKNHANMKNINIDYRVS 120
K R+LD+G G G P+A VT ++ K IA K ++N+ I
Sbjct: 67 KAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEI--VHG 124
Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
AEE + +++D++ V ++ ++ C LL G
Sbjct: 125 RAEEFGQEKKQYDVVT----SRAVASLNVLLELCLPLLKVGGGFLA 166
>gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General
function prediction only].
Length = 328
Score = 39.6 bits (92), Expect = 8e-04
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 65 FKGLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKN-------INI 115
K ILDLG G G +S + TVT ID S I +AK +A I+
Sbjct: 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206
Query: 116 DYRVSCAEEIAETDEKFDIIL-NMEVIEHVDN 146
++E + K D+++ N I DN
Sbjct: 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDN 238
>gnl|CDD|114142 pfam05401, NodS, Nodulation protein S (NodS). This family consists
of nodulation S (NodS) proteins. The products of the
rhizobial nodulation genes are involved in the
biosynthesis of lipochitin oligosaccharides (LCOs),
which are host-specific signal molecules required for
nodule formation. NodS is an S-adenosyl-L-methionine
(SAM)-dependent methyltransferase involved in N
methylation of LCOs. NodS uses N-deacetylated
chitooligosaccharides, the products of the NodBC
proteins, as its methyl acceptors.
Length = 201
Score = 39.8 bits (93), Expect = 8e-04
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 71 LDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETD 129
L++GC G +E +A +T ID + AIA+ MK +I + VS ++ + T+
Sbjct: 48 LEVGCAAGAFTERLAPYCQRLTVIDVMPE--AIARARLRMKKWSHISWIVSDVQQFS-TN 104
Query: 130 EKFDIILNMEV---IEHVDNIPYFIKTCCSLLLSNG-LMFISTINRN 172
E FD+I+ EV + V + ++ S+L +G L+F S + N
Sbjct: 105 ELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDGQLVFGSARDAN 151
>gnl|CDD|36485 KOG1271, KOG1271, KOG1271, Methyltransferases [General function
prediction only].
Length = 227
Score = 39.2 bits (91), Expect = 0.001
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 69 RILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126
R+LDLG G G L +A+ G +TG+D S K + +A+N A + + R +
Sbjct: 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129
Query: 127 ETDE--KFDIILN 137
+FD++L+
Sbjct: 130 PDFLSGQFDLVLD 142
>gnl|CDD|38220 KOG3010, KOG3010, KOG3010, Methyltransferase [General function
prediction only].
Length = 261
Score = 38.7 bits (90), Expect = 0.001
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 70 ILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--E 127
D+G G G + +A+ V D S + +AK H + + +S E +
Sbjct: 37 AWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG 96
Query: 128 TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMF 165
+E D+I + + H ++ F K +L +G +
Sbjct: 97 GEESVDLITAAQAV-HWFDLERFYKEAYRVLRKDGGLI 133
>gnl|CDD|33863 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 38.4 bits (89), Expect = 0.002
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 53 QHFQCKSDDTHPFKGL----------RILDLGCGGGLLSEPMAQM--GATVTGIDPSTKN 100
Q+ Q + + T P + L R++DLGCG G +E +A+ A +TGID S
Sbjct: 7 QYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM 66
Query: 101 IAIAKNH 107
+A A
Sbjct: 67 LAKAAQR 73
>gnl|CDD|32588 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 37.9 bits (88), Expect = 0.002
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNH-ANMKNINIDYRVSCA 122
G R+L++G G G + +A++ V I+ + A+ + + N+ R
Sbjct: 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129
Query: 123 EEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
+ + +D I+ V +P + L G + I
Sbjct: 130 SKGWPEEAPYDRII---VTAAAPEVP---EALLDQLKPGGRLVI 167
>gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 37.6 bits (87), Expect = 0.003
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 51 IMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA 108
+++ P G ++LDLGCG G+L +A+ A +T +D + + + A+
Sbjct: 150 LLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR--K 200
Query: 109 NMKNINIDYRVSCAEEIAE-TDEKFD-IILN---MEVIEHVDNIPY-FIKTCCSLLLSNG 162
N+ ++ A + E + KFD II N V ++ I L G
Sbjct: 201 NLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260
Query: 163 LMFISTINRNLKA 175
++I NR+L
Sbjct: 261 ELWI-VANRHLPY 272
>gnl|CDD|112651 pfam03848, TehB, Tellurite resistance protein TehB.
Length = 192
Score = 37.1 bits (86), Expect = 0.004
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
+ LDLGCG G S ++ +G VT +D + +IA ++ +N++I + A
Sbjct: 33 KALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLDIPTALYDINS-ASI 91
Query: 129 DEKFDIILNMEVIEHV--DNIPYFIK 152
DE +D IL+ V+ + + IP I
Sbjct: 92 DENYDFILSTVVLMFLQAERIPAIIA 117
>gnl|CDD|36754 KOG1541, KOG1541, KOG1541, Predicted protein carboxyl methylase
[General function prediction only].
Length = 270
Score = 36.9 bits (85), Expect = 0.006
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 45 KYIQDKIMQHFQ-------CKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97
KY Q+ + Q + K ILD+GCG GL ++ G G+D S
Sbjct: 22 KYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS 81
Query: 98 TKNIAIA 104
+ A
Sbjct: 82 PSMLEQA 88
>gnl|CDD|33685 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 36.1 bits (83), Expect = 0.011
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 61 DTHP--FKGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANMKNINI 115
D HP +G R+LDLG G GL++ A+ GA IDP + +A ++I
Sbjct: 72 DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL--EQAIRLNAAANGVSI 129
Query: 116 DYRVSCAEEIAETDEKFDIILNMEVI----EHVDNIPYF 150
+ ++ + FD++L ++ E IP+
Sbjct: 130 LF---THADLIGSPPAFDLLLAGDLFYNHTEADRLIPWK 165
>gnl|CDD|147424 pfam05219, DREV, DREV methyltransferase. This family contains DREV
protein homologues from several eukaryotes. The function
of this protein is unknown. However, these proteins
appear to be related to other methyltransferases
(Bateman A pers obs).
Length = 265
Score = 35.6 bits (82), Expect = 0.013
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
+LDLG G G ++ MA V + S + KN Y V E ET
Sbjct: 97 TLLDLGAGDGEITLRMAPTFEEVYATELSWTMR----DRLKKKN----YNVLTEIEWQET 148
Query: 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169
D D+IL + +++ + ++ L NG + ++ +
Sbjct: 149 DVNLDLILCLNLLDRCFDPFKLLEDIHLALAPNGRVIVALV 189
>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 35.6 bits (82), Expect = 0.015
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 64 PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNI-AIAKNHANMKNINIDYRVS 120
P G R+ D+G G G ++ A G V I+ + + I +N A N++
Sbjct: 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91
Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170
A E D I I NI ++ L G + + I
Sbjct: 92 DAPEALPDLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVANAIT 137
>gnl|CDD|36713 KOG1500, KOG1500, KOG1500, Protein arginine N-methyltransferase
CARM1 [Posttranslational modification, protein turnover,
chaperones, Transcription].
Length = 517
Score = 35.1 bits (80), Expect = 0.017
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 36 LHQINP----VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT- 90
Q N VR Q I+++ SD F+ +LD+G G G+LS AQ GA
Sbjct: 150 SQQQNMMQDYVRTGTYQRAILEN---HSD----FQDKIVLDVGAGSGILSFFAAQAGAKK 202
Query: 91 VTGIDPST----KNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILN 137
V ++ S +A N+ + I ++ E+I E EK D+I++
Sbjct: 203 VYAVEASEMAQYARKLVASNNLADRITVIPGKI---EDI-ELPEKVDVIIS 249
>gnl|CDD|36753 KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis
methyltransferase COQ5 [Coenzyme transport and
metabolism].
Length = 296
Score = 34.5 bits (79), Expect = 0.030
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 63 HPFKGLRILDLGCGGGLLS--------EPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN 114
P KG+++LD+ G G ++ + VT +D + +A+ K A + +
Sbjct: 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156
Query: 115 IDYRV----SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
RV AE++ D+ FD I +V +I ++ +L G
Sbjct: 157 ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 34.0 bits (78), Expect = 0.047
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 64 PFKGLRILDLGCGGG----LLSEPMAQMGATVTGIDPSTKNIAIAKNHA-NMKNINIDYR 118
+G + LD+ G G LS+ G V G+D + + + A NI++
Sbjct: 45 VKRGNKFLDVAGGTGDWTFGLSDSAGSSG-KVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
Query: 119 VSCAEEIAETDEKFDII 135
AEE+ D+ FDI+
Sbjct: 104 QGNAEELPFEDDSFDIV 120
>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA
dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase,
and other MDR family members. This group contains
enzymes of the zinc-dependent alcohol dehydrogenase
family, including members (aka MDR) identified as
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and
N-benzyl-3-pyrrolidinol dehydrogenase.
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase
catalyzes the conversion of
6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to
6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This
group displays the characteristic catalytic and
structural zinc sites of the zinc-dependent alcohol
dehydrogenases. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 338
Score = 33.4 bits (77), Expect = 0.061
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 66 KGLRILDLGCGG-GLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123
G +L +G GG GL + +A+ MGA V +D + + +AK + +N +
Sbjct: 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDK 224
Query: 124 EIAETDEKFDIIL 136
+ A FD+I
Sbjct: 225 KAAGLGGGFDVIF 237
>gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and
related tRNA-modifying enzymes [Translation, ribosomal
structure and biogenesis].
Length = 534
Score = 33.4 bits (76), Expect = 0.068
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 29 PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG 88
P F+ V I + +D T +LD+ CG G + +A+
Sbjct: 357 PGAFFQTNTSAAEVLYSTIGE----WAGLPADKT-------LLDVCCGTGTIGLALARGV 405
Query: 89 ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEK 131
V G++ S + A+ +A + I N + V AE++ +
Sbjct: 406 KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT 449
>gnl|CDD|39190 KOG3987, KOG3987, KOG3987, Uncharacterized conserved protein
DREV/CGI-81 [Function unknown].
Length = 288
Score = 33.1 bits (75), Expect = 0.085
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
+LDLG G G ++ MA V + S ++ KN Y V E +T
Sbjct: 115 TLLDLGAGDGEITLRMAPTFEEVYATELSWT----MRDRLKKKN----YNVLTEIEWLQT 166
Query: 129 DEKFDIILNMEVIEHVDN 146
D K D+IL + +++ +
Sbjct: 167 DVKLDLILCLNLLDRCFD 184
>gnl|CDD|38630 KOG3420, KOG3420, KOG3420, Predicted RNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 185
Score = 31.9 bits (72), Expect = 0.18
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 65 FKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDY 117
+G ++ DLGCG G+LS + +V G D + + I +A + ID
Sbjct: 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDL 100
>gnl|CDD|114449 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT). This
family consists of thiopurine S-methyltransferase
proteins from both eukaryotes and prokaryotes.
Thiopurine S-methyltransferase (TPMT) is a cytosolic
enzyme that catalyses S-methylation of aromatic and
heterocyclic sulfhydryl compounds, including anticancer
and immunosuppressive thiopurines.
Length = 203
Score = 31.6 bits (72), Expect = 0.22
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 36 LHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGID 95
+NP+ +++H+ D + GLR+L CG L +A+ G V G++
Sbjct: 4 QEGVNPL--------LVRHW----DALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVE 51
Query: 96 PSTKNIAIAK 105
S +A+ K
Sbjct: 52 IS--ELAVEK 59
>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 31.4 bits (71), Expect = 0.22
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 65 FKGLRILDLGCGGGLLS-EPMAQMGATVTGIDPSTK-------NIAIAKNHANMKNINID 116
+G R+LDL G G L E +++ A V ++ K N+ + + D
Sbjct: 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101
Query: 117 YRVSCAEEIAETDEKFDIIL 136
A + T E FD++
Sbjct: 102 --ALRALKQLGTREPFDLVF 119
>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 31.4 bits (71), Expect = 0.25
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 62 THPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119
K RILDLG G G L +AQ A + G++ + +A+ N+ ++ R+
Sbjct: 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ--RNVALNPLEERI 97
Query: 120 SCAEE------IAETDEKFDIILNMEVIEHVDNIPYF 150
E A FD+I + N PYF
Sbjct: 98 QVIEADIKEFLKALVFASFDLI--------ICNPPYF 126
>gnl|CDD|145605 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a
family of 2-dehydropantoate 2-reductases also known as
ketopantoate reductases, EC:1.1.1.169. The reaction
catalysed by this enzyme is: (R)-pantoate + NADP(+) <=>
2-dehydropantoate + NADPH. AbpA catalyses the NADPH
reduction of ketopantoic acid to pantoic acid in the
alternative pyrimidine biosynthetic (APB) pathway. ApbA
and PanE are allelic. ApbA, the ketopantoate reductase
enzyme is required for the synthesis of thiamine via the
APB biosynthetic pathway.
Length = 150
Score = 31.4 bits (72), Expect = 0.25
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 70 ILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE 127
I LG G G L +A+ G VT I AI +N + + + V +
Sbjct: 1 IAILGAGAVGSLYGARLARAGHDVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSA 60
Query: 128 T--DEKFDIIL-------NMEVIEHVDNIPYFIKTCCSLLLSNGL 163
+ D+++ E +E + P LLL NGL
Sbjct: 61 SEELGPADLVIVAVKAYQTAEALEDLA--PLLGPNTVVLLLQNGL 103
>gnl|CDD|32589 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 31.4 bits (71), Expect = 0.26
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 65 FKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSC 121
G R+L+ G G G L+ +A+ VT + A+ N+ + RV+
Sbjct: 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARE--NLSEFGLGDRVTL 150
Query: 122 -AEEIAE--TDEKFD-IILNM----EVIEHVDNI 147
++ E +E D + L++ V+EHV +
Sbjct: 151 KLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDA 184
>gnl|CDD|110158 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 205
Score = 30.8 bits (70), Expect = 0.37
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINID 116
G+R+L++G G G L+ A+M V I+ + + IA+ N++ + ++
Sbjct: 73 PGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARR--NLEKLGLE 124
>gnl|CDD|31989 COG1804, CaiB, Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion].
Length = 396
Score = 30.6 bits (69), Expect = 0.43
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 64 PFKGLRILDLG--CGGGLLSEPMAQMGATVTGIDP 96
P +GLR++DL G + +A +GA V ++
Sbjct: 7 PLEGLRVIDLAHVLAGPFAGQLLADLGAEVIKVER 41
>gnl|CDD|37941 KOG2730, KOG2730, KOG2730, Methylase [General function prediction
only].
Length = 263
Score = 30.0 bits (67), Expect = 0.58
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 39 INPVRI-KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97
+ P +I ++I ++++ + I+D CG G + A G V ID
Sbjct: 76 VTPEKIAEHIANRVVACMNAE----------VIVDAFCGVGGNTIQFALQGPYVIAIDID 125
Query: 98 TKNIAIAKNHANMKNI 113
IA A+++A + +
Sbjct: 126 PVKIACARHNAEVYGV 141
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 29.8 bits (68), Expect = 0.79
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 62 THPFKGLRILDLGCGG-GLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119
G +L +G G GL +A+ GA V +D + + A+ IN+
Sbjct: 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVG-DE 213
Query: 120 SCAEEIAE-TD-EKFDII 135
A + E TD E D++
Sbjct: 214 DVAARLRELTDGEGADVV 231
>gnl|CDD|36874 KOG1661, KOG1661, KOG1661, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase [Posttranslational modification,
protein turnover, chaperones].
Length = 237
Score = 29.5 bits (66), Expect = 0.86
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQM----GATVTGID 95
D H G LD+G G G L+ A+M G V GI+
Sbjct: 77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIE 115
>gnl|CDD|39160 KOG3957, KOG3957, KOG3957, Predicted L-carnitine
dehydratase/alpha-methylacyl-CoA racemase [Lipid
transport and metabolism].
Length = 387
Score = 29.2 bits (65), Expect = 1.0
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 63 HPFKGLRILDLGCGGGLLSEPMAQM-----GATVTGIDPSTKNIA 102
P G+++L+L GL P M GA VT +D N
Sbjct: 3 MPLSGIKVLEL---SGLAPGPFCGMVLADFGAEVTKVDRKNSNDE 44
>gnl|CDD|38913 KOG3709, KOG3709, KOG3709, PACS-1 cytosolic sorting protein
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 778
Score = 28.5 bits (63), Expect = 1.6
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 56 QCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI 115
+ K + P GLR DL G L+ M Q G ++P+++N+ + + K + +
Sbjct: 109 RKKFKNRLP-GGLR--DLAVGNINLTYIMQQGGLREIQLNPTSENVELKGRNFKQKIVAL 165
Query: 116 DYRVSCAEEIAETDEKFDI 134
R S + EI + I
Sbjct: 166 LKRFSVSPEIEPHMDSISI 184
>gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 258
Score = 28.8 bits (65), Expect = 1.7
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 38/124 (30%)
Query: 39 INPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPST 98
N I I DK + + +L++G G G L+E +A+ V I+
Sbjct: 14 TNKKVINRIVDKA-----------NLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDP 62
Query: 99 KNIAIAKN----HANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH-----VDNIPY 149
+ + H N++ ++ D L +H V NIPY
Sbjct: 63 RLAKRLQKKLALHPNVEVVHQD------------------FLKFSFPKHEPFLVVGNIPY 104
Query: 150 FIKT 153
I T
Sbjct: 105 NITT 108
>gnl|CDD|38131 KOG2920, KOG2920, KOG2920, Predicted methyltransferase [General
function prediction only].
Length = 282
Score = 28.4 bits (63), Expect = 2.0
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 55 FQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI 113
+ + F G R+L+LGCG L GA +V D + + + + +
Sbjct: 105 LKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRL------VTLP 158
Query: 114 NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNI 147
NI S A + + K D ILN + + V N
Sbjct: 159 NILVN-SHAGVEEKENHKVDEILNSLLSDGVFNH 191
>gnl|CDD|145904 pfam03003, DUF230, Poxvirus proteins of unknown function.
Length = 127
Score = 28.4 bits (64), Expect = 2.0
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 100 NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLL 159
NI+I + N+KN D +C + + V+ +IP+ + L+L
Sbjct: 66 NISI--GNLNLKNSKSDLINNCGSNLNSISDVNQGK----VLNQNIDIPFNLFPSFILIL 119
Query: 160 SNGLMFISTI 169
+ L + +
Sbjct: 120 A--LAVLFLL 127
>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like,
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and
other MDR family members. This subgroup of the medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family has members identified
as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A
dehydrogenase and alcohol dehydrogenases. The medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 277
Score = 28.0 bits (63), Expect = 2.4
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 61 DTHPFKGLRILDLGCG--GGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDY 117
D P G R+ +G G G L ++ GA V G+DP +A+
Sbjct: 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL------GPAD 145
Query: 118 RVSCAEEIAETDEKFDIIL 136
V+ D+++
Sbjct: 146 PVAADTADEIGGRGADVVI 164
>gnl|CDD|36714 KOG1501, KOG1501, KOG1501, Arginine N-methyltransferase [General
function prediction only].
Length = 636
Score = 28.1 bits (62), Expect = 2.7
Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 41/196 (20%)
Query: 70 ILDLGCGGGLLS-----------------EPMAQMGATVTGIDPSTKNIAIAKNHANMKN 112
+LD+G G GLLS +PM + + + + I + +
Sbjct: 70 VLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST--- 126
Query: 113 INIDYRVSCAEEIAETDEKFDIILNME-------------VIEHVDNIPYFIKTCCSLLL 159
+ S +IA E FD L E ++++ +PY C L+
Sbjct: 127 -EVKVGGSSRADIAVR-EDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVE 184
Query: 160 SNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219
S L ++ + N + L+ D + + + K++
Sbjct: 185 STFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQD--SQLVDA----IEKEFKLLS 238
Query: 220 RVGVVYNVFCNKWQLS 235
G ++ +W S
Sbjct: 239 SEGTIFYSDFPRWIDS 254
>gnl|CDD|111429 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 27.6 bits (62), Expect = 3.2
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 70 ILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKN-HANMKNINIDYRVSCAEEIA 126
+ D+G G G P+A +T ++ K I + + N+ + AEE
Sbjct: 52 VADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ 111
Query: 127 ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166
E++D+I V ++ + LL G
Sbjct: 112 HE-EQYDVIT----SRAVASLNELTEWALPLLKPGGYFLA 146
>gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing
protein/polyadenylated-RNA export factor [RNA processing
and modification].
Length = 591
Score = 27.7 bits (61), Expect = 3.5
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 30 TGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGC 75
F + + N ++ I DK+ F D P L+
Sbjct: 343 NPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIA 388
>gnl|CDD|33832 COG4074, Mth, H2-forming N5,N10-methylenetetrahydromethanopterin
dehydrogenase [Energy production and conversion].
Length = 343
Score = 27.3 bits (60), Expect = 4.0
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 179 AIIGAEYLLQWLPKGTHQ---YDKFIKPTEMECFLA 211
A+ A+ ++ WLPKG Q KFI +
Sbjct: 136 AVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVT 171
>gnl|CDD|38151 KOG2940, KOG2940, KOG2940, Predicted methyltransferase [General
function prediction only].
Length = 325
Score = 27.3 bits (60), Expect = 4.6
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 70 ILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128
D+GC G + + G + +D S I ++ A +I Y V E +
Sbjct: 76 AFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFK 134
Query: 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169
+ D+I++ + +++P + C L +GL FI+++
Sbjct: 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGL-FIASM 174
>gnl|CDD|30619 COG0270, Dcm, Site-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 328
Score = 27.0 bits (59), Expect = 4.7
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 68 LRILDLGCGGGLLSEPMAQMGATVTG---IDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124
++++DL G G LS + G + IDP N + I D + E
Sbjct: 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVAT-YKANFPHGDIILGDIKELDGEA 62
Query: 125 IAETDEKFDIILN 137
+ ++D D+++
Sbjct: 63 LRKSD--VDVLIG 73
>gnl|CDD|30569 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 27.2 bits (60), Expect = 4.9
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 70 ILDLGCGGGLLSEPMAQMGATVT--GIDPSTKNIAIAKNHA---NMKNINI 115
+L++G G G MA+ GI+ +A A +KN+ +
Sbjct: 52 VLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRL 102
>gnl|CDD|38009 KOG2798, KOG2798, KOG2798, Putative trehalase [Carbohydrate
transport and metabolism].
Length = 369
Score = 26.8 bits (59), Expect = 5.7
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTG 93
K I +++ F +RIL G G G L+ +A +G G
Sbjct: 132 KPIIEELNSLF---PSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQG 177
>gnl|CDD|38110 KOG2899, KOG2899, KOG2899, Predicted methyltransferase [General
function prediction only].
Length = 288
Score = 26.9 bits (59), Expect = 6.2
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 65 FKGLRILDLGCGGGLLSEPMAQ--MGATVTGIDPSTKNIAIAKNH 107
F+ + LD+GC G L+ +A+ + G+D I A+
Sbjct: 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKE 101
>gnl|CDD|37572 KOG2361, KOG2361, KOG2361, Predicted methyltransferase [General
function prediction only].
Length = 264
Score = 26.5 bits (58), Expect = 7.5
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 15/146 (10%)
Query: 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT----VTGIDPSTKN 100
++ + + IL++GCG G P+ + V D S +
Sbjct: 55 NWLLREFPELLPVDEKSA-----ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109
Query: 101 IAIAKNHA--NMKNINIDYRVSCAEEIAETDEK--FDIILNMEVIE--HVDNIPYFIKTC 154
I + K + + + + + E E+ DII + V+ H + + IK
Sbjct: 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNL 169
Query: 155 CSLLLSNGLMFISTINRNLKAMLLAI 180
+LL G + R A L
Sbjct: 170 RTLLKPGGSLLFRDYGRYDLAQLRFK 195
>gnl|CDD|34764 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 26.3 bits (57), Expect = 8.2
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDY 117
P L + L CGG ++ P +D + + + K Y
Sbjct: 363 PGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVEGRTY 416
>gnl|CDD|36637 KOG1423, KOG1423, KOG1423, Ras-like GTPase ERA [Cell cycle control,
cell division, chromosome partitioning, Signal
transduction mechanisms].
Length = 379
Score = 26.1 bits (57), Expect = 9.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 184 EYLLQWLPKGTHQYDKFIKPTEMECFLAANKV--KIIDRV--GVVYNVFCN 230
+YL+ P G +Y I E FL + V K++D + V YN+
Sbjct: 264 QYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVR 314
>gnl|CDD|39789 KOG4589, KOG4589, KOG4589, Cell division protein FtsJ [Cell cycle
control, cell division, chromosome partitioning].
Length = 232
Score = 26.1 bits (57), Expect = 9.5
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 46 YIQDKIMQHFQCKS-------DDTHPF--KGLRILDLGCGGGLLSEPMAQM---GATVTG 93
Y++ +Q+++ +S +D + F +LD G G S+ Q V G
Sbjct: 40 YVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLG 99
Query: 94 ID 95
+D
Sbjct: 100 VD 101
>gnl|CDD|145073 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesized that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 176
Score = 26.0 bits (58), Expect = 9.5
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 60 DDTHPFK--GLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKNINI 115
D+ K G +LDLG G S+ + + GA V +D + + ++ +I
Sbjct: 13 DERFGLKPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVD--LGPMKPIQGVTFLRG-DI 69
Query: 116 DYRVSCAEEIAET-DEKFDIIL-----NMEVIEHVD 145
E++ E K D++L N+ +E+ D
Sbjct: 70 -TDPETLEKLLELLPGKVDLVLCDGAPNVSGLENTD 104
>gnl|CDD|30539 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 26.3 bits (58), Expect = 9.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 63 HPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIA-IAKNH 107
+G ++ +G ++ +P+A + ATVT TK++A I KN
Sbjct: 152 IDLRGKNVVVVG-RSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,118,059
Number of extensions: 161989
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 72
Length of query: 254
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 162
Effective length of database: 4,275,709
Effective search space: 692664858
Effective search space used: 692664858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)