RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (254 letters) >gnl|CDD|32409 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]. Length = 243 Score = 271 bits (694), Expect = 2e-73 Identities = 116/234 (49%), Positives = 161/234 (68%), Gaps = 9/234 (3%) Query: 12 NQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRIL 71 + +++F +AS WW+P G+FKPLH+INP+R+ YI++ F GLR+L Sbjct: 13 DYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD--------LPGLRVL 64 Query: 72 DLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131 D+GCGGG+LSEP+A++GA+VTGID S K I +AK HA +NIDYR + E++A + Sbjct: 65 DVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQ 124 Query: 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLP 191 FD++ MEV+EHV + F++ C L+ G++F+STINR LKA LLAIIGAEY+L+ +P Sbjct: 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVP 184 Query: 192 KGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMV 245 KGTH Y KFIKP E+ +L +KIIDR G+ YN N W+LS ++ VNYMV Sbjct: 185 KGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNSWKLS-NDVSVNYMV 237 >gnl|CDD|36484 KOG1270, KOG1270, KOG1270, Methyltransferases [Coenzyme transport and metabolism]. Length = 282 Score = 217 bits (554), Expect = 2e-57 Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 5/246 (2%) Query: 6 PNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPF 65 + T+ + D + +F +A WW+ G PLH +N R+ +I+D + + + P Sbjct: 29 ASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPL 88 Query: 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANM---KNINIDYRVSCA 122 G++ILD+GCGGGLLSEP+A++GA VTGID S + +A H M I YR+ Sbjct: 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE 148 Query: 123 EEIAETD-EKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAII 181 + E KFD ++ EV+EHV + F+ +LL NG +FI+TINR + + I Sbjct: 149 DTDVEGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIF 208 Query: 182 GAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDV 241 AE +L+ +PKGTH ++KFI P E+ L AN ++ D VG VYN +W S KN + Sbjct: 209 LAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYNPISGQWLWS-KNTSL 267 Query: 242 NYMVLG 247 NY + Sbjct: 268 NYGIKA 273 >gnl|CDD|32411 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]. Length = 283 Score = 66.4 bits (162), Expect = 7e-12 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%) Query: 66 KGLRILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 G+ +LD+GCG G L+ A+ G TV G+ S + +A A+ + + + V ++ Sbjct: 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR-LQD 130 Query: 125 IAETDEKFDIILNMEVIEHV--DNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180 + +E FD I+++ + EHV +N F K +LL G M + +I + Sbjct: 131 YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFP 188 >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).. Length = 107 Score = 62.4 bits (152), Expect = 1e-10 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%) Query: 69 RILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAK-NHANMKNINIDYRVSCAEEIA 126 R+LDLGCG G L+ +A GA VTG+D S + +A+ A + N++ AEE+ Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 Query: 127 ET-DEKFD-IILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 DE FD II + + V+++ F++ LL G++ ++ Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 >gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]. Length = 287 Score = 56.5 bits (136), Expect = 6e-09 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 14/112 (12%) Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDY-RV 119 D PF+ R+LDLGCG GL E + M +TG+D S +A A Y + Sbjct: 122 DLGPFR--RMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG-------LYDTL 172 Query: 120 SCAEEIA----ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 AE + T E+FD+I+ +V+ ++ + LL GL S Sbjct: 173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 >gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]. Length = 238 Score = 53.0 bits (127), Expect = 9e-08 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 16/162 (9%) Query: 4 KYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTH 63 K K + F +A K +N + + + ++ + Sbjct: 2 KMVAKDEKQEKVQKVFDKVA----------KKYDLMNDL-MSFGLHRLWRRALISL--LG 48 Query: 64 PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA-NMKNINIDYRVS 120 G ++LD+ CG G ++ +A+ V G+D S + +A+ N+++ V Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNG 162 AE + D FD + + +V +I +K +L G Sbjct: 109 DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG 150 >gnl|CDD|30846 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]. Length = 257 Score = 52.5 bits (122), Expect = 1e-07 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 66 KGLRILDLGCGGGLLS--EPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCA 122 GL +LD+GCG G L+ + GA V G+D S + +A+A+ A + +D+ V+ A Sbjct: 48 GGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA 107 Query: 123 EEIA---ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLA 179 E FD+++++ V+ + ++ +L G + +S + R+ Sbjct: 108 LGGVLPFEDSASFDLVISLLVLHLLPPAK-ALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166 Query: 180 IIGAEYLLQWLPKGTHQYD 198 + L +G + Sbjct: 167 AALLGFGDPVLERGDILLE 185 >gnl|CDD|145480 pfam02353, CMAS, Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 Score = 49.6 bits (119), Expect = 9e-07 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 24/116 (20%) Query: 67 GLRILDLGCG-GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANM-----KNINIDYRVS 120 G+ +LD+GCG GGL+ + V G + ++KN + + +V Sbjct: 63 GMTLLDIGCGWGGLMRRAAERYDVNVVG-------LTLSKNQYKLARQRVAAEGLQRKV- 114 Query: 121 CAEEI-----AETDEKFDIILNMEVIEHV--DNIPYFIKTCCSLLLSNGLMFISTI 169 E+ + DE FD I+++ + EHV +N F K +LL GLM + TI Sbjct: 115 ---EVLLQDYRDFDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTI 167 >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 Score = 45.3 bits (108), Expect = 2e-05 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 41/175 (23%) Query: 66 KGLRILDLGCGGGLLSEPMA-----QMGATVTGIDPSTKNIAIAKN----HANMKNINID 116 G R+L G GG+ + A +GA VTG+ ST+N + ++ ID Sbjct: 143 PGQRVLINGASGGVGT--FAVQIAKALGAHVTGVC-STRNAELVRSLGADEV------ID 193 Query: 117 YRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAM 176 Y + EK+D+I + V N P+ + L G ++ ++ + Sbjct: 194 YTTEDFVALTAGGEKYDVIFDA-----VGNSPFSLYRASLALKPGG-RYV-SVGGGPSGL 246 Query: 177 LLAIIGAEYLLQWLPKGTHQYDKFIKP---------TEMECFLAANKVKI-IDRV 221 LL ++ L L G + F+ E+ + K+K ID V Sbjct: 247 LLVLLL---LPLTLGGGGRRLKFFLAKPNAEDLEQLAEL---VEEGKLKPVIDSV 295 >gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]. Length = 198 Score = 44.8 bits (106), Expect = 2e-05 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122 +G +LDLG G G+L+ A +GA V +D + + IA+ +A ++++ V+ Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV 102 Query: 123 EEIAETDEKFDIIL 136 + KFD ++ Sbjct: 103 SDF---RGKFDTVI 113 >gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 Score = 44.9 bits (107), Expect = 2e-05 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 16/118 (13%) Query: 69 RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINID----YRVSCA 122 ++LDLGCG G+L +A+ VT +D + + + A+ AN+ ++ + Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESAR--ANLAANGLENGEVFWSDLY 91 Query: 123 EEIAETDEKFD-IILNMEVIEHVDNIPY----FIKTCCSLLLSNGLMFISTINRNLKA 175 + KFD II N FI L G ++I NR+L Sbjct: 92 SAV--EPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWI-VANRHLGY 146 >gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]. Length = 280 Score = 43.4 bits (102), Expect = 6e-05 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 25/125 (20%) Query: 69 RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126 RILDLG G G ++ +A+ G A V +D S +A+A+ +A +N + V ++ Sbjct: 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE-RNGLVRVLVVQSDLFE 171 Query: 127 ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLS--------------NGLMFISTINRN 172 KFD+I V N PY LL +GL I Sbjct: 172 PLRGKFDLI--------VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE 223 Query: 173 LKAML 177 +L Sbjct: 224 APDIL 228 >gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]. Length = 300 Score = 43.0 bits (101), Expect = 8e-05 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINIDYRV 119 + KG +LD+GCG G+L+ A++GA V G+D + + A+ +A + + + + Sbjct: 157 EKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQA 216 Query: 120 SC-AEEIAETDEKFDII 135 + FD+I Sbjct: 217 KGFLLLEVPENGPFDVI 233 >gnl|CDD|36712 KOG1499, KOG1499, KOG1499, Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones, Transcription, Signal transduction mechanisms]. Length = 346 Score = 42.2 bits (99), Expect = 1e-04 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%) Query: 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTK- 99 VR ++ I+Q+ H FK +LD+GCG G+LS A+ GA V ++ S+ Sbjct: 43 VRTLAYRNAILQN-------KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA 95 Query: 100 NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDII 135 + A N I E+I EK DII Sbjct: 96 DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDII 131 >gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]. Length = 432 Score = 40.3 bits (94), Expect = 6e-04 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 11/103 (10%) Query: 38 QINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97 Q+NP + + + ++ + G R+LDL CG G P+A+ V G++ S Sbjct: 272 QVNPAVAEKLYETALEWLE-------LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEIS 324 Query: 98 TKNIAIAKNHANMKNI-NIDYRVSCAEEIAE---TDEKFDIIL 136 + + A+ +A I N+++ AEE K D+++ Sbjct: 325 PEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVV 367 >gnl|CDD|30706 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]. Length = 215 Score = 39.9 bits (93), Expect = 7e-04 Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 22/166 (13%) Query: 8 YTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQ-CKSDDTH-PF 65 T + + + + + +W + N I+ ++ +H + Sbjct: 16 VTEEQLEKLEAYVELLLKWNK---------AYNLTAIRDPEELWQRHILDSLVLLPYLDG 66 Query: 66 KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIA---IAKNHANMKNINIDYRVS 120 K R+LD+G G G P+A VT ++ K IA K ++N+ I Sbjct: 67 KAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEI--VHG 124 Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 AEE + +++D++ V ++ ++ C LL G Sbjct: 125 RAEEFGQEKKQYDVVT----SRAVASLNVLLELCLPLLKVGGGFLA 166 >gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General function prediction only]. Length = 328 Score = 39.6 bits (92), Expect = 8e-04 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 65 FKGLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKN-------INI 115 K ILDLG G G +S + TVT ID S I +AK +A I+ Sbjct: 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 Query: 116 DYRVSCAEEIAETDEKFDIIL-NMEVIEHVDN 146 ++E + K D+++ N I DN Sbjct: 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDN 238 >gnl|CDD|114142 pfam05401, NodS, Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors. Length = 201 Score = 39.8 bits (93), Expect = 8e-04 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%) Query: 71 LDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETD 129 L++GC G +E +A +T ID + AIA+ MK +I + VS ++ + T+ Sbjct: 48 LEVGCAAGAFTERLAPYCQRLTVIDVMPE--AIARARLRMKKWSHISWIVSDVQQFS-TN 104 Query: 130 EKFDIILNMEV---IEHVDNIPYFIKTCCSLLLSNG-LMFISTINRN 172 E FD+I+ EV + V + ++ S+L +G L+F S + N Sbjct: 105 ELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDGQLVFGSARDAN 151 >gnl|CDD|36485 KOG1271, KOG1271, KOG1271, Methyltransferases [General function prediction only]. Length = 227 Score = 39.2 bits (91), Expect = 0.001 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 69 RILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126 R+LDLG G G L +A+ G +TG+D S K + +A+N A + + R + Sbjct: 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 Query: 127 ETDE--KFDIILN 137 +FD++L+ Sbjct: 130 PDFLSGQFDLVLD 142 >gnl|CDD|38220 KOG3010, KOG3010, KOG3010, Methyltransferase [General function prediction only]. Length = 261 Score = 38.7 bits (90), Expect = 0.001 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Query: 70 ILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--E 127 D+G G G + +A+ V D S + +AK H + + +S E + Sbjct: 37 AWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG 96 Query: 128 TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMF 165 +E D+I + + H ++ F K +L +G + Sbjct: 97 GEESVDLITAAQAV-HWFDLERFYKEAYRVLRKDGGLI 133 >gnl|CDD|33863 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only]. Length = 257 Score = 38.4 bits (89), Expect = 0.002 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%) Query: 53 QHFQCKSDDTHPFKGL----------RILDLGCGGGLLSEPMAQM--GATVTGIDPSTKN 100 Q+ Q + + T P + L R++DLGCG G +E +A+ A +TGID S Sbjct: 7 QYLQFEDERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM 66 Query: 101 IAIAKNH 107 +A A Sbjct: 67 LAKAAQR 73 >gnl|CDD|32588 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 37.9 bits (88), Expect = 0.002 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNH-ANMKNINIDYRVSCA 122 G R+L++G G G + +A++ V I+ + A+ + + N+ R Sbjct: 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 Query: 123 EEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 + + +D I+ V +P + L G + I Sbjct: 130 SKGWPEEAPYDRII---VTAAAPEVP---EALLDQLKPGGRLVI 167 >gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]. Length = 300 Score = 37.6 bits (87), Expect = 0.003 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%) Query: 51 IMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA 108 +++ P G ++LDLGCG G+L +A+ A +T +D + + + A+ Sbjct: 150 LLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR--K 200 Query: 109 NMKNINIDYRVSCAEEIAE-TDEKFD-IILN---MEVIEHVDNIPY-FIKTCCSLLLSNG 162 N+ ++ A + E + KFD II N V ++ I L G Sbjct: 201 NLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 Query: 163 LMFISTINRNLKA 175 ++I NR+L Sbjct: 261 ELWI-VANRHLPY 272 >gnl|CDD|112651 pfam03848, TehB, Tellurite resistance protein TehB. Length = 192 Score = 37.1 bits (86), Expect = 0.004 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128 + LDLGCG G S ++ +G VT +D + +IA ++ +N++I + A Sbjct: 33 KALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLDIPTALYDINS-ASI 91 Query: 129 DEKFDIILNMEVIEHV--DNIPYFIK 152 DE +D IL+ V+ + + IP I Sbjct: 92 DENYDFILSTVVLMFLQAERIPAIIA 117 >gnl|CDD|36754 KOG1541, KOG1541, KOG1541, Predicted protein carboxyl methylase [General function prediction only]. Length = 270 Score = 36.9 bits (85), Expect = 0.006 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 7/67 (10%) Query: 45 KYIQDKIMQHFQ-------CKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97 KY Q+ + Q + K ILD+GCG GL ++ G G+D S Sbjct: 22 KYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS 81 Query: 98 TKNIAIA 104 + A Sbjct: 82 PSMLEQA 88 >gnl|CDD|33685 COG3897, COG3897, Predicted methyltransferase [General function prediction only]. Length = 218 Score = 36.1 bits (83), Expect = 0.011 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 14/99 (14%) Query: 61 DTHP--FKGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANMKNINI 115 D HP +G R+LDLG G GL++ A+ GA IDP + +A ++I Sbjct: 72 DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL--EQAIRLNAAANGVSI 129 Query: 116 DYRVSCAEEIAETDEKFDIILNMEVI----EHVDNIPYF 150 + ++ + FD++L ++ E IP+ Sbjct: 130 LF---THADLIGSPPAFDLLLAGDLFYNHTEADRLIPWK 165 >gnl|CDD|147424 pfam05219, DREV, DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs). Length = 265 Score = 35.6 bits (82), Expect = 0.013 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Query: 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128 +LDLG G G ++ MA V + S + KN Y V E ET Sbjct: 97 TLLDLGAGDGEITLRMAPTFEEVYATELSWTMR----DRLKKKN----YNVLTEIEWQET 148 Query: 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169 D D+IL + +++ + ++ L NG + ++ + Sbjct: 149 DVNLDLILCLNLLDRCFDPFKLLEDIHLALAPNGRVIVALV 189 >gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]. Length = 187 Score = 35.6 bits (82), Expect = 0.015 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 64 PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNI-AIAKNHANMKNINIDYRVS 120 P G R+ D+G G G ++ A G V I+ + + I +N A N++ Sbjct: 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91 Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170 A E D I I NI ++ L G + + I Sbjct: 92 DAPEALPDLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 >gnl|CDD|36713 KOG1500, KOG1500, KOG1500, Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones, Transcription]. Length = 517 Score = 35.1 bits (80), Expect = 0.017 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 20/111 (18%) Query: 36 LHQINP----VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT- 90 Q N VR Q I+++ SD F+ +LD+G G G+LS AQ GA Sbjct: 150 SQQQNMMQDYVRTGTYQRAILEN---HSD----FQDKIVLDVGAGSGILSFFAAQAGAKK 202 Query: 91 VTGIDPST----KNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILN 137 V ++ S +A N+ + I ++ E+I E EK D+I++ Sbjct: 203 VYAVEASEMAQYARKLVASNNLADRITVIPGKI---EDI-ELPEKVDVIIS 249 >gnl|CDD|36753 KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]. Length = 296 Score = 34.5 bits (79), Expect = 0.030 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 63 HPFKGLRILDLGCGGGLLS--------EPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN 114 P KG+++LD+ G G ++ + VT +D + +A+ K A + + Sbjct: 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156 Query: 115 IDYRV----SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 RV AE++ D+ FD I +V +I ++ +L G Sbjct: 157 ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. Length = 233 Score = 34.0 bits (78), Expect = 0.047 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%) Query: 64 PFKGLRILDLGCGGG----LLSEPMAQMGATVTGIDPSTKNIAIAKNHA-NMKNINIDYR 118 +G + LD+ G G LS+ G V G+D + + + A NI++ Sbjct: 45 VKRGNKFLDVAGGTGDWTFGLSDSAGSSG-KVVGLDINENMLKEGEKKAKEEGKYNIEFL 103 Query: 119 VSCAEEIAETDEKFDII 135 AEE+ D+ FDI+ Sbjct: 104 QGNAEELPFEDDSFDIV 120 >gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338 Score = 33.4 bits (77), Expect = 0.061 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 66 KGLRILDLGCGG-GLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 G +L +G GG GL + +A+ MGA V +D + + +AK + +N + Sbjct: 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDK 224 Query: 124 EIAETDEKFDIIL 136 + A FD+I Sbjct: 225 KAAGLGGGFDVIF 237 >gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]. Length = 534 Score = 33.4 bits (76), Expect = 0.068 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%) Query: 29 PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG 88 P F+ V I + +D T +LD+ CG G + +A+ Sbjct: 357 PGAFFQTNTSAAEVLYSTIGE----WAGLPADKT-------LLDVCCGTGTIGLALARGV 405 Query: 89 ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEK 131 V G++ S + A+ +A + I N + V AE++ + Sbjct: 406 KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT 449 >gnl|CDD|39190 KOG3987, KOG3987, KOG3987, Uncharacterized conserved protein DREV/CGI-81 [Function unknown]. Length = 288 Score = 33.1 bits (75), Expect = 0.085 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Query: 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128 +LDLG G G ++ MA V + S ++ KN Y V E +T Sbjct: 115 TLLDLGAGDGEITLRMAPTFEEVYATELSWT----MRDRLKKKN----YNVLTEIEWLQT 166 Query: 129 DEKFDIILNMEVIEHVDN 146 D K D+IL + +++ + Sbjct: 167 DVKLDLILCLNLLDRCFD 184 >gnl|CDD|38630 KOG3420, KOG3420, KOG3420, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]. Length = 185 Score = 31.9 bits (72), Expect = 0.18 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 65 FKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDY 117 +G ++ DLGCG G+LS + +V G D + + I +A + ID Sbjct: 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDL 100 >gnl|CDD|114449 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203 Score = 31.6 bits (72), Expect = 0.22 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 14/70 (20%) Query: 36 LHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGID 95 +NP+ +++H+ D + GLR+L CG L +A+ G V G++ Sbjct: 4 QEGVNPL--------LVRHW----DALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVE 51 Query: 96 PSTKNIAIAK 105 S +A+ K Sbjct: 52 IS--ELAVEK 59 >gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]. Length = 187 Score = 31.4 bits (71), Expect = 0.22 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 65 FKGLRILDLGCGGGLLS-EPMAQMGATVTGIDPSTK-------NIAIAKNHANMKNINID 116 +G R+LDL G G L E +++ A V ++ K N+ + + D Sbjct: 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101 Query: 117 YRVSCAEEIAETDEKFDIIL 136 A + T E FD++ Sbjct: 102 --ALRALKQLGTREPFDLVF 119 >gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]. Length = 248 Score = 31.4 bits (71), Expect = 0.25 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 18/97 (18%) Query: 62 THPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119 K RILDLG G G L +AQ A + G++ + +A+ N+ ++ R+ Sbjct: 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ--RNVALNPLEERI 97 Query: 120 SCAEE------IAETDEKFDIILNMEVIEHVDNIPYF 150 E A FD+I + N PYF Sbjct: 98 QVIEADIKEFLKALVFASFDLI--------ICNPPYF 126 >gnl|CDD|145605 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway. Length = 150 Score = 31.4 bits (72), Expect = 0.25 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 13/105 (12%) Query: 70 ILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE 127 I LG G G L +A+ G VT I AI +N + + + V + Sbjct: 1 IAILGAGAVGSLYGARLARAGHDVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSA 60 Query: 128 T--DEKFDIIL-------NMEVIEHVDNIPYFIKTCCSLLLSNGL 163 + D+++ E +E + P LLL NGL Sbjct: 61 SEELGPADLVIVAVKAYQTAEALEDLA--PLLGPNTVVLLLQNGL 103 >gnl|CDD|32589 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]. Length = 256 Score = 31.4 bits (71), Expect = 0.26 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 13/94 (13%) Query: 65 FKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSC 121 G R+L+ G G G L+ +A+ VT + A+ N+ + RV+ Sbjct: 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARE--NLSEFGLGDRVTL 150 Query: 122 -AEEIAE--TDEKFD-IILNM----EVIEHVDNI 147 ++ E +E D + L++ V+EHV + Sbjct: 151 KLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDA 184 >gnl|CDD|110158 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). Length = 205 Score = 30.8 bits (70), Expect = 0.37 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%) Query: 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINID 116 G+R+L++G G G L+ A+M V I+ + + IA+ N++ + ++ Sbjct: 73 PGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARR--NLEKLGLE 124 >gnl|CDD|31989 COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]. Length = 396 Score = 30.6 bits (69), Expect = 0.43 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 64 PFKGLRILDLG--CGGGLLSEPMAQMGATVTGIDP 96 P +GLR++DL G + +A +GA V ++ Sbjct: 7 PLEGLRVIDLAHVLAGPFAGQLLADLGAEVIKVER 41 >gnl|CDD|37941 KOG2730, KOG2730, KOG2730, Methylase [General function prediction only]. Length = 263 Score = 30.0 bits (67), Expect = 0.58 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 11/76 (14%) Query: 39 INPVRI-KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97 + P +I ++I ++++ + I+D CG G + A G V ID Sbjct: 76 VTPEKIAEHIANRVVACMNAE----------VIVDAFCGVGGNTIQFALQGPYVIAIDID 125 Query: 98 TKNIAIAKNHANMKNI 113 IA A+++A + + Sbjct: 126 PVKIACARHNAEVYGV 141 >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 Score = 29.8 bits (68), Expect = 0.79 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 62 THPFKGLRILDLGCGG-GLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119 G +L +G G GL +A+ GA V +D + + A+ IN+ Sbjct: 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVG-DE 213 Query: 120 SCAEEIAE-TD-EKFDII 135 A + E TD E D++ Sbjct: 214 DVAARLRELTDGEGADVV 231 >gnl|CDD|36874 KOG1661, KOG1661, KOG1661, Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 237 Score = 29.5 bits (66), Expect = 0.86 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQM----GATVTGID 95 D H G LD+G G G L+ A+M G V GI+ Sbjct: 77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIE 115 >gnl|CDD|39160 KOG3957, KOG3957, KOG3957, Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase [Lipid transport and metabolism]. Length = 387 Score = 29.2 bits (65), Expect = 1.0 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 8/45 (17%) Query: 63 HPFKGLRILDLGCGGGLLSEPMAQM-----GATVTGIDPSTKNIA 102 P G+++L+L GL P M GA VT +D N Sbjct: 3 MPLSGIKVLEL---SGLAPGPFCGMVLADFGAEVTKVDRKNSNDE 44 >gnl|CDD|38913 KOG3709, KOG3709, KOG3709, PACS-1 cytosolic sorting protein [Intracellular trafficking, secretion, and vesicular transport]. Length = 778 Score = 28.5 bits (63), Expect = 1.6 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 56 QCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI 115 + K + P GLR DL G L+ M Q G ++P+++N+ + + K + + Sbjct: 109 RKKFKNRLP-GGLR--DLAVGNINLTYIMQQGGLREIQLNPTSENVELKGRNFKQKIVAL 165 Query: 116 DYRVSCAEEIAETDEKFDI 134 R S + EI + I Sbjct: 166 LKRFSVSPEIEPHMDSISI 184 >gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase. Length = 258 Score = 28.8 bits (65), Expect = 1.7 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 38/124 (30%) Query: 39 INPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPST 98 N I I DK + + +L++G G G L+E +A+ V I+ Sbjct: 14 TNKKVINRIVDKA-----------NLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDP 62 Query: 99 KNIAIAKN----HANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH-----VDNIPY 149 + + H N++ ++ D L +H V NIPY Sbjct: 63 RLAKRLQKKLALHPNVEVVHQD------------------FLKFSFPKHEPFLVVGNIPY 104 Query: 150 FIKT 153 I T Sbjct: 105 NITT 108 >gnl|CDD|38131 KOG2920, KOG2920, KOG2920, Predicted methyltransferase [General function prediction only]. Length = 282 Score = 28.4 bits (63), Expect = 2.0 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 55 FQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI 113 + + F G R+L+LGCG L GA +V D + + + + + Sbjct: 105 LKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRL------VTLP 158 Query: 114 NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNI 147 NI S A + + K D ILN + + V N Sbjct: 159 NILVN-SHAGVEEKENHKVDEILNSLLSDGVFNH 191 >gnl|CDD|145904 pfam03003, DUF230, Poxvirus proteins of unknown function. Length = 127 Score = 28.4 bits (64), Expect = 2.0 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 100 NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLL 159 NI+I + N+KN D +C + + V+ +IP+ + L+L Sbjct: 66 NISI--GNLNLKNSKSDLINNCGSNLNSISDVNQGK----VLNQNIDIPFNLFPSFILIL 119 Query: 160 SNGLMFISTI 169 + L + + Sbjct: 120 A--LAVLFLL 127 >gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277 Score = 28.0 bits (63), Expect = 2.4 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 61 DTHPFKGLRILDLGCG--GGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDY 117 D P G R+ +G G G L ++ GA V G+DP +A+ Sbjct: 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL------GPAD 145 Query: 118 RVSCAEEIAETDEKFDIIL 136 V+ D+++ Sbjct: 146 PVAADTADEIGGRGADVVI 164 >gnl|CDD|36714 KOG1501, KOG1501, KOG1501, Arginine N-methyltransferase [General function prediction only]. Length = 636 Score = 28.1 bits (62), Expect = 2.7 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 41/196 (20%) Query: 70 ILDLGCGGGLLS-----------------EPMAQMGATVTGIDPSTKNIAIAKNHANMKN 112 +LD+G G GLLS +PM + + + + I + + Sbjct: 70 VLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST--- 126 Query: 113 INIDYRVSCAEEIAETDEKFDIILNME-------------VIEHVDNIPYFIKTCCSLLL 159 + S +IA E FD L E ++++ +PY C L+ Sbjct: 127 -EVKVGGSSRADIAVR-EDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVE 184 Query: 160 SNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 S L ++ + N + L+ D + + + K++ Sbjct: 185 STFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQD--SQLVDA----IEKEFKLLS 238 Query: 220 RVGVVYNVFCNKWQLS 235 G ++ +W S Sbjct: 239 SEGTIFYSDFPRWIDS 254 >gnl|CDD|111429 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 Score = 27.6 bits (62), Expect = 3.2 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%) Query: 70 ILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKN-HANMKNINIDYRVSCAEEIA 126 + D+G G G P+A +T ++ K I + + N+ + AEE Sbjct: 52 VADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ 111 Query: 127 ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 E++D+I V ++ + LL G Sbjct: 112 HE-EQYDVIT----SRAVASLNELTEWALPLLKPGGYFLA 146 >gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]. Length = 591 Score = 27.7 bits (61), Expect = 3.5 Identities = 9/46 (19%), Positives = 15/46 (32%) Query: 30 TGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGC 75 F + + N ++ I DK+ F D P L+ Sbjct: 343 NPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIA 388 >gnl|CDD|33832 COG4074, Mth, H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]. Length = 343 Score = 27.3 bits (60), Expect = 4.0 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%) Query: 179 AIIGAEYLLQWLPKGTHQ---YDKFIKPTEMECFLA 211 A+ A+ ++ WLPKG Q KFI + Sbjct: 136 AVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVT 171 >gnl|CDD|38151 KOG2940, KOG2940, KOG2940, Predicted methyltransferase [General function prediction only]. Length = 325 Score = 27.3 bits (60), Expect = 4.6 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Query: 70 ILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET 128 D+GC G + + G + +D S I ++ A +I Y V E + Sbjct: 76 AFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFK 134 Query: 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169 + D+I++ + +++P + C L +GL FI+++ Sbjct: 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGL-FIASM 174 >gnl|CDD|30619 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]. Length = 328 Score = 27.0 bits (59), Expect = 4.7 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 68 LRILDLGCGGGLLSEPMAQMGATVTG---IDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 ++++DL G G LS + G + IDP N + I D + E Sbjct: 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVAT-YKANFPHGDIILGDIKELDGEA 62 Query: 125 IAETDEKFDIILN 137 + ++D D+++ Sbjct: 63 LRKSD--VDVLIG 73 >gnl|CDD|30569 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]. Length = 227 Score = 27.2 bits (60), Expect = 4.9 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 70 ILDLGCGGGLLSEPMAQMGATVT--GIDPSTKNIAIAKNHA---NMKNINI 115 +L++G G G MA+ GI+ +A A +KN+ + Sbjct: 52 VLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRL 102 >gnl|CDD|38009 KOG2798, KOG2798, KOG2798, Putative trehalase [Carbohydrate transport and metabolism]. Length = 369 Score = 26.8 bits (59), Expect = 5.7 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTG 93 K I +++ F +RIL G G G L+ +A +G G Sbjct: 132 KPIIEELNSLF---PSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQG 177 >gnl|CDD|38110 KOG2899, KOG2899, KOG2899, Predicted methyltransferase [General function prediction only]. Length = 288 Score = 26.9 bits (59), Expect = 6.2 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 65 FKGLRILDLGCGGGLLSEPMAQ--MGATVTGIDPSTKNIAIAKNH 107 F+ + LD+GC G L+ +A+ + G+D I A+ Sbjct: 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKE 101 >gnl|CDD|37572 KOG2361, KOG2361, KOG2361, Predicted methyltransferase [General function prediction only]. Length = 264 Score = 26.5 bits (58), Expect = 7.5 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 15/146 (10%) Query: 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT----VTGIDPSTKN 100 ++ + + IL++GCG G P+ + V D S + Sbjct: 55 NWLLREFPELLPVDEKSA-----ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 Query: 101 IAIAKNHA--NMKNINIDYRVSCAEEIAETDEK--FDIILNMEVIE--HVDNIPYFIKTC 154 I + K + + + + + E E+ DII + V+ H + + IK Sbjct: 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNL 169 Query: 155 CSLLLSNGLMFISTINRNLKAMLLAI 180 +LL G + R A L Sbjct: 170 RTLLKPGGSLLFRDYGRYDLAQLRFK 195 >gnl|CDD|34764 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]. Length = 591 Score = 26.3 bits (57), Expect = 8.2 Identities = 10/54 (18%), Positives = 17/54 (31%) Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDY 117 P L + L CGG ++ P +D + + + K Y Sbjct: 363 PGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVEGRTY 416 >gnl|CDD|36637 KOG1423, KOG1423, KOG1423, Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]. Length = 379 Score = 26.1 bits (57), Expect = 9.2 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 184 EYLLQWLPKGTHQYDKFIKPTEMECFLAANKV--KIIDRV--GVVYNVFCN 230 +YL+ P G +Y I E FL + V K++D + V YN+ Sbjct: 264 QYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVR 314 >gnl|CDD|39789 KOG4589, KOG4589, KOG4589, Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]. Length = 232 Score = 26.1 bits (57), Expect = 9.5 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%) Query: 46 YIQDKIMQHFQCKS-------DDTHPF--KGLRILDLGCGGGLLSEPMAQM---GATVTG 93 Y++ +Q+++ +S +D + F +LD G G S+ Q V G Sbjct: 40 YVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLG 99 Query: 94 ID 95 +D Sbjct: 100 VD 101 >gnl|CDD|145073 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 176 Score = 26.0 bits (58), Expect = 9.5 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 14/96 (14%) Query: 60 DDTHPFK--GLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKNINI 115 D+ K G +LDLG G S+ + + GA V +D + + ++ +I Sbjct: 13 DERFGLKPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVD--LGPMKPIQGVTFLRG-DI 69 Query: 116 DYRVSCAEEIAET-DEKFDIIL-----NMEVIEHVD 145 E++ E K D++L N+ +E+ D Sbjct: 70 -TDPETLEKLLELLPGKVDLVLCDGAPNVSGLENTD 104 >gnl|CDD|30539 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]. Length = 283 Score = 26.3 bits (58), Expect = 9.6 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Query: 63 HPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIA-IAKNH 107 +G ++ +G ++ +P+A + ATVT TK++A I KN Sbjct: 152 IDLRGKNVVVVG-RSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.136 0.418 Gapped Lambda K H 0.267 0.0673 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,118,059 Number of extensions: 161989 Number of successful extensions: 433 Number of sequences better than 10.0: 1 Number of HSP's gapped: 419 Number of HSP's successfully gapped: 72 Length of query: 254 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 162 Effective length of database: 4,275,709 Effective search space: 692664858 Effective search space used: 692664858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.5 bits)