BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (254 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 531 bits (1368), Expect = e-153, Method: Compositional matrix adjust. Identities = 254/254 (100%), Positives = 254/254 (100%) Query: 1 MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD 60 MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD Sbjct: 1 MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD 60 Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS 120 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS Sbjct: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS 120 Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI Sbjct: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180 Query: 181 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD Sbjct: 181 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240 Query: 241 VNYMVLGHLPKTEQ 254 VNYMVLGHLPKTEQ Sbjct: 241 VNYMVLGHLPKTEQ 254 >gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 302 Score = 30.8 bits (68), Expect = 0.024, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 10 TKNQDAINQFSNIASEWWEPTGKFK-PLHQINPVRIKYIQDKIMQ 53 + Q + +F I + + EP FK P +N R+KY+Q +IM+ Sbjct: 29 ARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMR 73 >gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 30.8 bits (68), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%) Query: 68 LRILDLGCGGG-----LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122 +RILDLG G G LL E G G+D S K + IAK++A ++ + + Sbjct: 99 VRILDLGTGTGAVCLALLKESPFFKG---VGVDISCKALEIAKSNAVTNGVSERFDTLQS 155 Query: 123 EEIAETDEKFDIILN 137 + + + FD+I++ Sbjct: 156 DWFSSVEGLFDVIVS 170 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%) Query: 96 PSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131 PS K I + KN N+K I+++ + +EIAE E+ Sbjct: 253 PSQKKIMLGKNGQNIKTISLEAK----KEIAEILEQ 284 >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGID 95 P G ILD G G S +MG+ V +D Sbjct: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 >gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 228 Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 46 YIQDKIMQHFQCKSDDTHPFKGLRIL 71 Y++ K +H Q + H FKG R+L Sbjct: 105 YVRKKSKKHGQKSQIEGHLFKGARVL 130 >gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 23.5 bits (49), Expect = 3.8, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 87 MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126 +GA G+ P T+ A + H +M I VS A +A Sbjct: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272 >gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 23.5 bits (49), Expect = 3.9, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149 V+C EEIA + + ++I+H N PY Sbjct: 248 VACPEEIAYRHDFINESQFFQLIDHFGNSPY 278 >gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter asiaticus str. psy62] Length = 106 Score = 23.1 bits (48), Expect = 4.7, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 203 PTEMECFLAANKVKIIDRVGVVY 225 PT C + V+++D +GV Y Sbjct: 26 PTSPRCGFSGKVVQVLDSLGVSY 48 >gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 22.7 bits (47), Expect = 5.7, Method: Compositional matrix adjust. Identities = 7/31 (22%), Positives = 19/31 (61%) Query: 59 SDDTHPFKGLRILDLGCGGGLLSEPMAQMGA 89 ++ + G+ ++++G G G L++ + +GA Sbjct: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 >gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 22.7 bits (47), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Query: 118 RVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169 R+ A I ++D+K II+NM+ + NI I L L N ++ I T+ Sbjct: 85 RIFEALNIIDSDKKSQIIVNMQA--DIPNIEPEILASVLLPLQNPIVDIGTL 134 >gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 22.3 bits (46), Expect = 8.0, Method: Compositional matrix adjust. Identities = 7/22 (31%), Positives = 15/22 (68%) Query: 79 LLSEPMAQMGATVTGIDPSTKN 100 +L +++GA +T +D +T+N Sbjct: 239 ILENKASEVGARITAMDNATRN 260 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.418 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,096 Number of Sequences: 1233 Number of extensions: 6813 Number of successful extensions: 21 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 13 length of query: 254 length of database: 328,796 effective HSP length: 72 effective length of query: 182 effective length of database: 240,020 effective search space: 43683640 effective search space used: 43683640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)