BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9
3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (254 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 254

 Score =  531 bits (1368), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD 60
           MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD
Sbjct: 1   MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD 60

Query: 61  DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS 120
           DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS
Sbjct: 61  DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS 120

Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180
           CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI
Sbjct: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180

Query: 181 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240
           IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD
Sbjct: 181 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240

Query: 241 VNYMVLGHLPKTEQ 254
           VNYMVLGHLPKTEQ
Sbjct: 241 VNYMVLGHLPKTEQ 254


>gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 302

 Score = 30.8 bits (68), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 10 TKNQDAINQFSNIASEWWEPTGKFK-PLHQINPVRIKYIQDKIMQ 53
           + Q  + +F  I + + EP   FK P   +N  R+KY+Q +IM+
Sbjct: 29 ARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMR 73


>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 264

 Score = 30.8 bits (68), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 68  LRILDLGCGGG-----LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122
           +RILDLG G G     LL E     G    G+D S K + IAK++A    ++  +    +
Sbjct: 99  VRILDLGTGTGAVCLALLKESPFFKG---VGVDISCKALEIAKSNAVTNGVSERFDTLQS 155

Query: 123 EEIAETDEKFDIILN 137
           +  +  +  FD+I++
Sbjct: 156 DWFSSVEGLFDVIVS 170


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score = 25.0 bits (53), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 96  PSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131
           PS K I + KN  N+K I+++ +    +EIAE  E+
Sbjct: 253 PSQKKIMLGKNGQNIKTISLEAK----KEIAEILEQ 284


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 341

 Score = 23.9 bits (50), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGID 95
          P  G  ILD   G G  S    +MG+ V  +D
Sbjct: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65


>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 23.9 bits (50), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 46  YIQDKIMQHFQCKSDDTHPFKGLRIL 71
           Y++ K  +H Q    + H FKG R+L
Sbjct: 105 YVRKKSKKHGQKSQIEGHLFKGARVL 130


>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 23.5 bits (49), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 87  MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126
           +GA   G+ P T+  A +  H +M  I     VS A  +A
Sbjct: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272


>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 292

 Score = 23.5 bits (49), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149
           V+C EEIA   +  +     ++I+H  N PY
Sbjct: 248 VACPEEIAYRHDFINESQFFQLIDHFGNSPY 278


>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 106

 Score = 23.1 bits (48), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 203 PTEMECFLAANKVKIIDRVGVVY 225
           PT   C  +   V+++D +GV Y
Sbjct: 26  PTSPRCGFSGKVVQVLDSLGVSY 48


>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 284

 Score = 22.7 bits (47), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 7/31 (22%), Positives = 19/31 (61%)

Query: 59 SDDTHPFKGLRILDLGCGGGLLSEPMAQMGA 89
          ++ +    G+ ++++G G G L++ +  +GA
Sbjct: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70


>gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 268

 Score = 22.7 bits (47), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 118 RVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169
           R+  A  I ++D+K  II+NM+    + NI   I     L L N ++ I T+
Sbjct: 85  RIFEALNIIDSDKKSQIIVNMQA--DIPNIEPEILASVLLPLQNPIVDIGTL 134


>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 294

 Score = 22.3 bits (46), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 79  LLSEPMAQMGATVTGIDPSTKN 100
           +L    +++GA +T +D +T+N
Sbjct: 239 ILENKASEVGARITAMDNATRN 260


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,096
Number of Sequences: 1233
Number of extensions: 6813
Number of successful extensions: 21
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 13
length of query: 254
length of database: 328,796
effective HSP length: 72
effective length of query: 182
effective length of database: 240,020
effective search space: 43683640
effective search space used: 43683640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)