HHsearch alignment for GI: 254780873 and conserved domain: PRK00275
>PRK00275 glnD PII uridylyl-transferase; Provisional.
Probab=93.84 E-value=0.47 Score=26.99 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=70.5
Q ss_pred CHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC-CH------HH---HHHHHHHHHHHHHH---
Q ss_conf 0001277500048410001455412850111234432222333101212-30------24---77668878988860---
Q gi|254780873|r 267 AQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT-PS------SS---LEKALAVLSDNKEN--- 333 (411)
Q Consensus 267 ~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i-~~------~d---~~~~~~~L~~~~~~--- 333 (411)
T Consensus 705 t~i~V~-~~D~~gLFa~i~g~l~~~~lnI~~A~I~t~~dg~~lD~-f~V~d~~~~~~~~~~~r~~~i~~~l~~~l~~~~~ 782 (894)
T PRK00275 705 TQIFIY-APDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDT-YIVLDADGEPIGNNPARIEQIREGLTEALRNPDD 782 (894)
T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 699999-25887659999999997898268989887379808999-9996688886657799999999999998668410
Q ss_pred ---------------CC-CCEEEEE----CCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCEE--EEE
Q ss_conf ---------------59-6158974----891699996678667855799999999867982999--97078489--999
Q gi|254780873|r 334 ---------------IG-YDVIQHE----DNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIKI--SVL 389 (411)
Q Consensus 334 ---------------~~-~~~I~~~----~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~I--S~V 389 (411)
T Consensus 783 ~~~~~~rr~~r~~k~f~v~~~V~idn~~s~~~TvlEV~a---~DRpGLL~~I~~~l~~~~l~I~~AkI~T~Gerv~DvFy 859 (894)
T PRK00275 783 YPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIA---PDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFF 859 (894)
T ss_pred CHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEE
T ss_conf 005553005643367999987998068988848999995---88076999999999988987988896354760899999
Q ss_pred ECH
Q ss_conf 708
Q gi|254780873|r 390 IDS 392 (411)
Q Consensus 390 V~~ 392 (411)
T Consensus 860 Vtd 862 (894)
T PRK00275 860 ITD 862 (894)
T ss_pred EEC
T ss_conf 967