HHsearch alignment for GI: 254780873 and conserved domain: PRK03059
>PRK03059 PII uridylyl-transferase; Provisional.
Probab=90.09 E-value=1.6 Score=23.48 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCH-HHH-------HHHHHHHHHHH-H------------
Q ss_conf 50004841000145541285011123443222233310121230-247-------76688789888-6------------
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPS-SSL-------EKALAVLSDNK-E------------ 332 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~-~d~-------~~~~~~L~~~~-~------------ 332 (411)
T Consensus 686 ~~Dr~gLFa~i~g~l~~~~lnI~~A~i~t~~dG~ald~-F~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~~~r~ 764 (857)
T PRK03059 686 TPDQPDLFARICGYFDRNGFSILDARVHTTRHGYALDT-FQVTDPERDVHYRDIANLVEHELAERLAESAPLPEPSKGRL 764 (857)
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEE-EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
T ss_conf 57888829999999987898278889998378838999-99956887743389999999999998605566540220334
Q ss_pred -----HCCC-CEEEEEC----CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCE--EEEEECH
Q ss_conf -----0596-1589748----91699996678667855799999999867982999--9707848--9999708
Q gi|254780873|r 333 -----NIGY-DVIQHED----NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIK--ISVLIDS 392 (411)
Q Consensus 333 -----~~~~-~~I~~~~----~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~--IS~VV~~ 392 (411)
T Consensus 765 ~r~~k~f~~~~~V~i~~~~s~~~TvlEV~a---~DrpGLL~~I~~~l~~~~l~I~~AkI~T~Gerv~DvFyV~g 835 (857)
T PRK03059 765 SRQSRSFPITPRVDLRPDERGQYYILSVSA---NDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDVFLLDG 835 (857)
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf 410015899985899517988748999995---88177999999999988977989896364761899999859