HHsearch alignment for GI: 254780873 and conserved domain: PRK05092
>PRK05092 PII uridylyl-transferase; Provisional.
Probab=90.10 E-value=1.6 Score=23.48 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=70.7
Q ss_pred CCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---------HHHHHHHHHHHHHH---
Q ss_conf 620001277500048410001455412850111234432222333101212302---------47766887898886---
Q gi|254780873|r 265 DEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---------SLEKALAVLSDNKE--- 332 (411)
Q Consensus 265 ~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---------d~~~~~~~L~~~~~--- 332 (411)
T Consensus 734 ~~tev~V~-~~DrpgLFa~iagala~~glnI~dA~I~T~~dG~alD~-F~V~d~~g~~~~~~~r~~~l~~~i~~~L~g~~ 811 (934)
T PRK05092 734 GVTELTVL-AADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDT-FWIQDAFGRDEDEPRRLARLGKAIEDALSGEV 811 (934)
T ss_pred CEEEEEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEE-EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 84899999-61788859999999997899547889898489809999-99966888988889999999999999975887
Q ss_pred --------H---------CCC-CEEEEE----CCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCEE--
Q ss_conf --------0---------596-158974----891699996678667855799999999867982999--97078489--
Q gi|254780873|r 333 --------N---------IGY-DVIQHE----DNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIKI-- 386 (411)
Q Consensus 333 --------~---------~~~-~~I~~~----~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~I-- 386 (411)
T Consensus 812 ~~~~~~~~r~~~~~r~k~f~v~~~V~idn~~S~~~TviEV~a---~DRPGLL~~I~~~l~~~~l~I~sAkIaT~Gerv~D 888 (934)
T PRK05092 812 RLPEALAKRTKPKKRARAFKVPPRVTIDNEASNRFTVIEVNG---RDRPGLLYDLTRALSDLNLNIASAHIATYGERAVD 888 (934)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEE
T ss_conf 634566512576554567999987998258988758999995---88078999999999988977999896255762899
Q ss_pred EEEEC
Q ss_conf 99970
Q gi|254780873|r 387 SVLID 391 (411)
Q Consensus 387 S~VV~ 391 (411)
T Consensus 889 vFyVt 893 (934)
T PRK05092 889 VFYVT 893 (934)
T ss_pred EEEEE
T ss_conf 99997