HHsearch alignment for GI: 254780873 and conserved domain: TIGR00657

>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=100.00  E-value=0  Score=907.07  Aligned_cols=403  Identities=45%  Similarity=0.675  Sum_probs=379.0

Q ss_pred             CCEEEEEECCCCCCCH--HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----------------
Q ss_conf             9669996085845888--999999999999996799889998068730489999999861489-----------------
Q gi|254780873|r    1 MARIVMKFGGTSVANI--DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----------------   61 (411)
Q Consensus         1 M~~iV~KfGGtSv~~~--~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----------------   61 (411)
T Consensus         1 m~~iV~KFGGTSVg~~PverI~~~A~~v~~~~~~g~~vvVVVSA~~g~Td~Lv~~~~~~~~~~~~~~~~~~~~~Ir~~~~   80 (504)
T TIGR00657         1 MMLIVQKFGGTSVGNAPVERIRRVAKIVLKEKEKGNQVVVVVSAMAGVTDALVELAEKVSPGPSAAQEKEFLEKIREKHL   80 (504)
T ss_pred             CCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf             97479973675766732378999999888875358973899973775336899999860464433036799999998400


Q ss_pred             ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
Q ss_conf             ----------------------------------------98899999983129999999999984399--863567332
Q gi|254780873|r   62 ----------------------------------------NARERDVVISTGEQVSSGLMVLALQSLGI--QAISLQGWQ   99 (411)
Q Consensus        62 ----------------------------------------~~~~~d~i~s~GE~~s~~l~a~~l~~~G~--~a~~l~~~~   99 (411)
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~L~~~~~LGe~~~~~~D~ilS~GE~~S~~l~~~~l~~~G~K~~~~~l~~~~  160 (504)
T TIGR00657        81 EILERLIIPQAIAEKLKRLLDAELVLLKKVLLGISYLGEVTPREMDRILSVGERLSIALLSAALEELGVKAKAVSLTGAQ  160 (504)
T ss_pred             CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             04777407733689999999988999999999878734688687441312035888999999997457852012211474


Q ss_pred             CCCCCCCCCCCCC-----CCCCCCCCHHHHHHHC-CEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHC
Q ss_conf             4551213355200-----0123621003343106-805860343335568424430686242899999884734556534
Q gi|254780873|r  100 IPIMTDSLHGMAR-----ICRVDEKKIVTHLKKK-QVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYT  173 (411)
Q Consensus       100 ~~i~t~~~~~~a~-----~~~~~~~~l~~~l~~~-~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~t  173 (411)
T Consensus       161 ~~I~T~~~~~~A~p~~~~~~~~~~~rL~~~L~~g~~ipvvaGF~G~~~~g~~TtLGRGGSD~tA~llA~aL~Ad~~~IyT  240 (504)
T TIGR00657       161 AGILTDSNFGRARPDLAVIIEILTERLEPLLEEGDIIPVVAGFQGATEKGEITTLGRGGSDYTAALLAAALKADECEIYT  240 (504)
T ss_pred             CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             54554476676412024677766999999984698799984004105775079830680689999999861996899987


Q ss_pred             CHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             614402458421234411056799999998840311013788764331-38526761123777776543545454210--
Q gi|254780873|r  174 DVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAML-YKMCLFVRSSFEDHGQQEQLGTLICSGED--  250 (411)
Q Consensus       174 dV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~-~~ipi~i~ntf~~~~~~~~~GT~I~~~~~--  250 (411)
T Consensus       241 DV~Gi~T~DPR~V~~Ar~i~~isy~Em~ELA~~GAKVLHPr~~ep~~~~~~ip~~v~st~~----~~a~GT~I~~~~~~~  316 (504)
T TIGR00657       241 DVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRDYKIPIVVKSTFN----PEAPGTLIVASSKAK  316 (504)
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCC----CCCCCEEECCCCCCC
T ss_conf             2795032788637665204544878999998503165327889998467995189960778----899966871774457


Q ss_pred             -----CCCCCCCCCCCCCCCCCHHCCCCCCCC---CCCCCHHHHHHHHCC----CCEECCC----CCCC--CCCCCCCCE
Q ss_conf             -----122231011123466200012775000---484100014554128----5011123----4432--222333101
Q gi|254780873|r  251 -----IMEKKVITGIAYTKDEAQISLRRLRDH---PGISASIFSPLAEAH----INIDMII----QNVS--EDGQYVDIT  312 (411)
Q Consensus       251 -----~~~~~~Vk~Is~~~~i~~Iti~~~~~~---~g~~a~If~~La~~~----I~VdmI~----qs~s--~~~~~~~Is  312 (411)
T Consensus       317 ~~~s~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~g~~~~vf~~l~~~~~~l~i~v~~I~~~y~Q~~~~~~~~-~~di~  395 (504)
T TIGR00657       317 KGESESMEEPIVKGISLDKNQARVTVSGLGMKGSMPGILAEVFGALAEAGHGLLINVDLISDKYKQSSSKIETS-KTDIS  395 (504)
T ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCC-CEEEE
T ss_conf             51012266630234411366168998522678751027889999986237942632134675303556764015-30599


Q ss_pred             EECCHHH--HHHHHHHH---------HHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE-
Q ss_conf             2123024--77668878---------98886059615897489169999667866785579999999986798299997-
Q gi|254780873|r  313 FTTPSSS--LEKALAVL---------SDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT-  380 (411)
Q Consensus       313 f~i~~~d--~~~~~~~L---------~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is-  380 (411)
T Consensus       396 f~v~~~~i~~~~a~~~l~~~f~~~~l~~~~~~~~~~~~~~~~~~a~vS~vG~gm~~~~G~a~~~f~~L~~~~~NI~misQ  475 (504)
T TIGR00657       396 FTVDKEDIEADQAKELLKKEFLQTLLKSELNLSALSSVEVEKKLAKVSIVGAGMKSAPGVAAKIFEALAQNGINIEMISQ  475 (504)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCHHCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99625357768999999887887546688731563116770664389987610220565788999887426896899971


Q ss_pred             -ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf             -0784899997088999999999987097
Q gi|254780873|r  381 -TSEIKISVLIDSAYTELAVRSLHSCYGL  408 (411)
Q Consensus       381 -sSe~~IS~VV~~~d~~~Av~~LH~~F~l  408 (411)
T Consensus       476 G~SE~~iS~vv~~~d~~~av~~LH~~~~~  504 (504)
T TIGR00657       476 GTSEIKISFVVDEKDAEKAVRALHEAFFE  504 (504)
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             68860799997162478999999998449