HHsearch alignment for GI: 254780873 and conserved domain: TIGR02078
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative; InterPro: IPR011819 This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from Escherichia coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~100 amino acids in between..
Probab=100.00 E-value=0 Score=387.93 Aligned_cols=292 Identities=30% Similarity=0.451 Sum_probs=230.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH-------------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986-------------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQV------------------------- 57 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~------------------------- 57 (411)
T Consensus 1 ~iV~KFGGsSvr~~--F~eA~~L~~~L~-E~~~v~VVVSALkGiTD~L~~ya~t~D~~~~~~i~~~y~~f~~~~gvd~~~ 77 (341)
T TIGR02078 1 MIVVKFGGSSVRYD--FEEALELVKSLS-EEKEVVVVVSALKGITDELIRYANTFDKKAAVKIEEIYVEFAKELGVDLNI 77 (341)
T ss_pred CEEEEECCCCHHHH--HHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 96898568413666--899999999851-698689998534442579998731104688999999999877750886223
Q ss_pred ------------HCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CC
Q ss_conf ------------14899-88999999831299999999999843998635673324551213355200012362----10
Q gi|254780873|r 58 ------------TSIDN-ARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDE----KK 120 (411)
Q Consensus 58 ------------~~~~~-~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~----~~ 120 (411)
T Consensus 78 l~~~l~~~~n~~~dlP~keAL~D~I~S~GE~lSA~ifaeGL~~L~i~g~~v~p~d~-~~A~G~FGnafidik~Sk~~~k~ 156 (341)
T TIGR02078 78 LSPYLKELFNPKPDLPPKEALRDYILSLGELLSAVIFAEGLKLLGINGKVVDPWDL-LVAKGEFGNAFIDIKKSKRNAKI 156 (341)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCHHH-EEEECCCCCEEEEHHHHHHHHHH
T ss_conf 34678876236778781122356677775789999997013531203227652666-27743646547746465557778
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHH
Q ss_conf 03343106805860343335568424430686242899999884734556534614402458421234411056799999
Q gi|254780873|r 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200 (411)
Q Consensus 121 l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea 200 (411)
T Consensus 157 ~~~~l~~G~iPvipGF~g-nlnGyrvTlGRGGSDYSAvalg~l~~s~~v~IMSdVEGIfTADPKLvPsArLIpY~SY~Ei 235 (341)
T TIGR02078 157 LYEVLESGKIPVIPGFYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEI 235 (341)
T ss_pred HHHHHHCCCEEEECCCCC-CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCCCCHHCCCCCCHHHH
T ss_conf 898886583022146206-8884489864786227999999875122689973456004358663750010333347799
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHCCCCCC---
Q ss_conf 99884031101378876433138526761123777776543545454210122231011123466--2000127750---
Q gi|254780873|r 201 LEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKD--EAQISLRRLR--- 275 (411)
Q Consensus 201 ~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~--i~~Iti~~~~--- 275 (411)
T Consensus 236 ~iAaK~GMkAl~wkA~~l~~e~~ip~lfGrt~d-----wr~GT~~s~~~s---~~Pl--~~y~~~~D~AEl~vv~~~~~i 305 (341)
T TIGR02078 236 LIAAKLGMKALQWKAADLAKEYKIPVLFGRTRD-----WRMGTVVSNRSS---GMPL--MVYKDGEDFAELLVVNVEREI 305 (341)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC-----CEEEEEEECCCC---CCCE--EEEECCCCEEEEEEEEEEECC
T ss_conf 997452057776652000157543587415466-----401267762658---8877--897046555778998520012
Q ss_pred CCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 0048410001455412850111234432222333101212302477668878988
Q gi|254780873|r 276 DHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 276 ~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
T Consensus 306 ~y~g~-----~v~e--------------E-g~-f~~~~~vp~~~~~~~irelHr~ 339 (341)
T TIGR02078 306 SYPGY-----LVIE--------------E-GE-FWKLYKVPKEDGIEIIRELHRK 339 (341)
T ss_pred CCCCE-----EEEE--------------C-CC-CEEEEEECHHHHHHHHHHHHHH
T ss_conf 55753-----7997--------------3-77-6379982503468999998664