HHsearch alignment for GI: 254780873 and conserved domain: cd04244
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=0 Score=574.26 Aligned_cols=239 Identities=43% Similarity=0.606 Sum_probs=217.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI---------------------- 60 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~---------------------- 60 (411)
T Consensus 1 riV~KFGGtSva~~~~i~~v~~II~~~-~~~~~~vVVVSA~~gvTn~L~~~~~~a~~~~~~~~~~~~~~i~~~h~~~~~~ 79 (298)
T cd04244 1 RLVMKFGGTSVGSAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 957984910118999999999998554-6699989997799998899999999985267678999999999999999998
Q ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------------------------------99889999998312999999999998439986356733245512133
Q gi|254780873|r 61 ---------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSL 107 (411)
Q Consensus 61 ---------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~ 107 (411)
T Consensus 80 l~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~~e~s~~~~D~ils~GE~lSa~l~a~~L~~~Gi~a~~~d~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHCCEECCCC
T ss_conf 53657689999999999999999998776531178688999998788999999999999679997995479875504787
Q ss_pred CCCCCCCCCCCCC----HHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCC
Q ss_conf 5520001236210----033431068058603433355684244306862428999998847345565346144024584
Q gi|254780873|r 108 HGMARICRVDEKK----IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP 183 (411)
Q Consensus 108 ~~~a~~~~~~~~~----l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDP 183 (411)
T Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDyTAailA~~l~A~~~~IwtDV~Gi~taDP 239 (298)
T cd04244 160 FGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADP 239 (298)
T ss_pred CCCEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCEEECCC
T ss_conf 65400335219999999888750592899938255589876655589947899999999728878999439883260799
Q ss_pred CCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 212344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 184 RIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 184 r~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
T Consensus 240 r~v~~a~~i~~lsy~EA~ELa~~GakVlHP~ti~p~~~~~IPi~Iknt~~----p~~~GT~Is 298 (298)
T cd04244 240 RIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFN----PEAPGTLIT 298 (298)
T ss_pred CCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 76888757473289999999967974059999999998799689938999----899981559