HHsearch alignment for GI: 254780873 and conserved domain: cd04251
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.53 E-value=4.3e-13 Score=108.02 Aligned_cols=211 Identities=24% Similarity=0.334 Sum_probs=136.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH---HHC------CC-CHHHHHHH-HHH
Q ss_conf 99960858458889999999999999967998899980687304899999998---614------89-98899999-983
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ---VTS------ID-NARERDVV-IST 72 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~---~~~------~~-~~~~~d~i-~s~ 72 (411)
T Consensus 1 iVIK~GG~~l~d~~~---~~~~l~---~lG~~~VlVHGgg~qI~~~l~~~gi~~~fv~~~~Gl~~RvTd~~~l~~v~~~~ 74 (257)
T cd04251 1 IVVKIGGSVVSDLDK---VIDDIA---NFGERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM 74 (257)
T ss_pred CEEEECHHHHHCHHH---HHHHHH---HCCCCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCEEECCHHHHHHHHHHH
T ss_conf 989989588769899---999999---75999899979977999999985999677417898620218989999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------------CC-CCCCCCCCCCCHHHHHHHCCEEEEEC
Q ss_conf 12999999999998439986356733245512133----------------55-20001236210033431068058603
Q gi|254780873|r 73 GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSL----------------HG-MARICRVDEKKIVTHLKKKQVVVITG 135 (411)
Q Consensus 73 GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~----------------~~-~a~~~~~~~~~l~~~l~~~~v~v~~G 135 (411)
T Consensus 75 g~-vn~~l-v~~l~~~g~~a~glsg~d~~~~~~~~~~~~~~~~~g~~~~id~g~vG~v~~V~~~~i~~ll~~g~iPVis- 151 (257)
T cd04251 75 GL-INKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVS- 151 (257)
T ss_pred HH-HHHHH-HHHHHHCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEEEC-
T ss_conf 99-99999-9999848998652226667368985125244246786010457976779898789999998489945866-
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHH---CCCCCHH
Q ss_conf 4333556842443068624289999988473455653461440245842123441105679999999884---0311013
Q gi|254780873|r 136 FQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSS---LGAKVMQ 212 (411)
Q Consensus 136 f~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~---~Gakvlh 212 (411)
T Consensus 152 pig~~~~G~~~Nv---naD~~A~~iA~aL~A~kLI~ltdv~Gvl-~d------g~li~~l~~~e~~~li~~i~gGM-~pK 220 (257)
T cd04251 152 PVAYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLY-LD------GRVIERITVSDAESLLEKAGGGM-KRK 220 (257)
T ss_pred CCCCCCCCCEECC---CHHHHHHHHHHHCCCCEEEEEECCCEEE-CC------CEECCCCCHHHHHHHHHHHCCCH-HHH
T ss_conf 7666887607428---7799999999980999699996884042-49------84536589999999998734853-999
Q ss_pred HHHHHHHHHCCCE-EEEECCCCC
Q ss_conf 7887643313852-676112377
Q gi|254780873|r 213 VRSVELAMLYKMC-LFVRSSFED 234 (411)
Q Consensus 213 p~~~~~~~~~~ip-i~i~ntf~~ 234 (411)
T Consensus 221 l~aa~~A~~~GV~~v~Ii~g~~~ 243 (257)
T cd04251 221 LLAAAEAVEGGVREVVIGDARAD 243 (257)
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999809997999079998