HHsearch alignment for GI: 254780873 and conserved domain: cd04252

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.35  E-value=3.3e-11  Score=95.37  Aligned_cols=186  Identities=15%  Similarity=0.180  Sum_probs=123.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHH-HHHHHHHHH
Q ss_conf             996085845888999999999999996799889998068730489999999861489-----98899999-983129999
Q gi|254780873|r    5 VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVV-ISTGEQVSS   78 (411)
Q Consensus         5 V~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i-~s~GE~~s~   78 (411)
T Consensus         2 VIk~GG~~~~d--~~~~l~~di~lL~~lGi~~VlVHGgg~qI~~~l~~~gi~~~~~~G~RvTd~~~l~~v~~vl~-~vn~   78 (248)
T cd04252           2 VIKVGGAIIED--DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENL   78 (248)
T ss_pred             EEEECCHHHHH--HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHH
T ss_conf             79999177652--19999999999998899599991898788899998699853138844689899999999999-9999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf             9999999843998635673324--5512133552-000123621003343106805860343335568424430686242
Q gi|254780873|r   79 GLMVLALQSLGIQAISLQGWQI--PIMTDSLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDT  155 (411)
Q Consensus        79 ~l~a~~l~~~G~~a~~l~~~~~--~i~t~~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~  155 (411)
T Consensus        79 ~lv~-~l~~~g~~a~~i~g~~~~a~~~~~~~~g~vG~v~~Vd~~~i~~lL~~g~Ipvisp-ig~~~~G~~~Nvn---aD~  153 (248)
T cd04252          79 KLVE-ALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTS-LAETPSGQLLNVN---ADV  153 (248)
T ss_pred             HHHH-HHHHCCCCEEEECCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCCEEEEE-EEECCCCCEEEEC---HHH
T ss_conf             9999-9996599738603763688866765678432258982999999985899448851-4788999989879---999


Q ss_pred             HHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHH-HHHHHH
Q ss_conf             8999998847345565346144024584212344110567999-999988
Q gi|254780873|r  156 SAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFE-EMLEMS  204 (411)
Q Consensus       156 tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~-Ea~eLa  204 (411)
T Consensus       154 ~A~~iA~aL~A~kLi~ltdv~Gv~d~~g~------~i~~l~~~~~~~~l~  197 (248)
T cd04252         154 AAGELARVLEPLKIVFLNETGGLLDGTGK------KISAINLDEEYDDLM  197 (248)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCC------CCCCCCHHHHHHHHH
T ss_conf             99999997599989999588301799999------974278899999998