HHsearch alignment for GI: 254780873 and conserved domain: cd04259
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=0 Score=551.72 Aligned_cols=239 Identities=32% Similarity=0.489 Sum_probs=207.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH------------------------
Q ss_conf 69996085845888999999999999996799889998068730489999999861------------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVT------------------------ 58 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~------------------------ 58 (411)
T Consensus 1 ~iV~KFGGTSv~~~~~~~~v~~ii~~~~~~~~~~vvVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~i~~~h~~~~~~l~~ 80 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEV 80 (295)
T ss_pred CEEEEECHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98997680105879999999999998874799989997999998368999999875364466999999999999998521
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------------489988999999831299999999999843998635673324551213355200012
Q gi|254780873|r 59 -----------------------SIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 (411)
Q Consensus 59 -----------------------~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~ 115 (411)
T Consensus 81 ~~~~~l~~~~~~l~~~l~~i~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ldar~~i~~~~~-~~~~~~~~ 159 (295)
T cd04259 81 DADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPT-LGGETMNY 159 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEECCCC-CCCCCHHH
T ss_conf 47789999999999999876640479888999999998999999999999967998379648992000467-67531123
Q ss_pred --------CCCCCHHHHHHH-CCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC
Q ss_conf --------362100334310-68058603433355684244306862428999998847345565346144024584212
Q gi|254780873|r 116 --------VDEKKIVTHLKK-KQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 (411)
Q Consensus 116 --------~~~~~l~~~l~~-~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v 186 (411)
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~v~~GFig~~~~G~~tTLGRgGSDyTAa~ia~~l~A~~v~IwtDV~Gi~taDPr~v 239 (295)
T cd04259 160 LSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEV 239 (295)
T ss_pred HHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 44356564154989987514985999678434569998777258973058999999749987999977776756898768
Q ss_pred CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 187 ~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
T Consensus 240 ~~A~~i~~lsy~EA~eLa~~GakVlHp~t~~p~~~~~Ipi~Irnt~~----p~~~GT~Is 295 (295)
T cd04259 240 PHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTER----PELSGTLIT 295 (295)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 88846573389999999967984168999999998499189928999----999982669