HHsearch alignment for GI: 254780873 and conserved domain: cd04878
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.96 E-value=0.11 Score=31.17 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHH
Q ss_conf 5000484100014554128501112344322223331012123024
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d 319 (411)
T Consensus 7 veN~pGvL~Rit~lF~rRg~NI~Sl~v~~te~~~~sR~tivv~~~~ 52 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD 52 (72)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCH
T ss_conf 9778789999999986078556789986137998489999997888