RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(411 letters)
>gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 614 bits (1585), Expect = e-176
Identities = 231/410 (56%), Positives = 304/410 (74%), Gaps = 7/410 (1%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
MA IV KFGGTSV +++ I+ A VK EV+ G +V +VVSAM G TD L +L ++V+ +
Sbjct: 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPL 60
Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
+ RE D+++STGEQVS L+ +ALQSLG++A S GWQ I+TDS HG ARI +D +
Sbjct: 61 PDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSR 120
Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180
I L + VVV+ GFQG+ D +TTLGRGGSDT+AVA+AAA+KAD C+IYTDV G+YT
Sbjct: 121 IREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYT 180
Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240
TDPRI PKA + KIS+EEMLE++SLGAKV+ RSVE A Y + L VRSSF D+
Sbjct: 181 TDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDNP---- 236
Query: 241 LGTLICSG-EDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMII 299
GTLI E+IME+ V+TGIA+ KDEA++++ + D PGI+A IF LAEA+IN+DMI+
Sbjct: 237 -GTLITGEEEEIMEQPVVTGIAFDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIV 295
Query: 300 QNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYA 359
QNVSEDG+ DITFT P LEKAL +L + K+ IG + + ++D++ K+S +G+GM+S+
Sbjct: 296 QNVSEDGK-TDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP 354
Query: 360 GVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
GVA+ F LAE+GINI+ I+TSEIKISVLID Y ELAVR+LH +GLD
Sbjct: 355 GVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALHEAFGLD 404
>gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional.
Length = 587
Score = 425 bits (1096), Expect = e-120
Identities = 187/418 (44%), Positives = 267/418 (63%), Gaps = 15/418 (3%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
MA IV KFGGTSV +++ I++ A + R + G +V +VVSAM TD L +L ++++S
Sbjct: 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSN 60
Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
RE D+++STGEQVS L+ +AL LG AISL G Q+ I+T+S HG ARI + +
Sbjct: 61 PPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDR 120
Query: 121 IVTHLKKKQVVVITGFQG--LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGI 178
I HL +VVV+ GFQG LS + +TTLGRGGSDTSAVA+AAA+ AD C+IYTDV G+
Sbjct: 121 IQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGV 180
Query: 179 YTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238
TTDPR+ P+A LM +IS +EMLE++SLGA V+ R+VE+A Y + L VRSS+ D
Sbjct: 181 LTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSD---- 236
Query: 239 EQLGTLICS-------GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEA 291
GTL+ S + K + G+ +D+A+++L R+ D PGI+A +F LA
Sbjct: 237 -APGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQ 295
Query: 292 HINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAI 351
+N+D+IIQ++ E G DI FT + L+KA AV +G + E N+ K+S
Sbjct: 296 GVNVDLIIQSIHE-GNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSIS 354
Query: 352 GIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
G GM G+A+ F LAE GINI+ I+TSE+K+S +ID+ + A+R++ + L+
Sbjct: 355 GAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELE 412
Score = 142 bits (360), Expect = 2e-34
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 227 FVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFS 286
V +FE Q ++ ++ + G+A +++AQ+++R + D PG++ASIF
Sbjct: 404 AVCEAFELEDSQIEINPTASGQDEP----EVRGVALDRNQAQLAIRNVPDRPGMAASIFG 459
Query: 287 PLAEAHINIDMIIQNV-SEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNL 345
LAEA+I++DMI+Q+ DI+FT P E A VL + + + ++ +
Sbjct: 460 ALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVEDGPAI 519
Query: 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSC 405
K+S +G GM GVA+ F LA+ GINI+ I TSEI+ S ++ A++++H
Sbjct: 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVHQA 579
Query: 406 YGLD 409
+GL
Sbjct: 580 FGLA 583
>gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase. The Lys-sensitive enzyme
of Bacillus subtilis resembles the E. coli form but is
an alpha 2/beta 2 heterotetramer, where the beta subunit
is translated from an in-phase alternative initiator at
Met-246. This may be a feature of a number of closely
related forms, including a paralog from B. subtilis.
Length = 441
Score = 399 bits (1026), Expect = e-112
Identities = 175/449 (38%), Positives = 253/449 (56%), Gaps = 50/449 (11%)
Query: 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS-- 59
A IV KFGGTSV N + IR A V +E +G +V +VVSAM+G TD L EL Q +
Sbjct: 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGP 60
Query: 60 --------------------------------------IDNARERDVVISTGEQVSSGLM 81
+ RE D ++S GE++S+ L+
Sbjct: 61 SKEFLEKIREKHIEILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALL 120
Query: 82 VLALQSLGIQAISLQGWQIPIMTDSLHGMAR-ICRVDEKKIVTHLKKKQVVVITGFQGLS 140
AL+ LG++A+SL G + I+TDS G AR I + +++ L++ + V+ GFQG +
Sbjct: 121 SAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGAT 180
Query: 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200
TTLGRGGSD +A +AAA+KAD C+IYTDV GIYTTDPRI P A + +IS+EEM
Sbjct: 181 EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEM 240
Query: 201 LEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGI 260
LE++S GAKV+ R++E AM K+ + V+S+F E GTLI + ME+ ++ G+
Sbjct: 241 LELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNP----EAPGTLIVASTKEMEEPIVKGL 296
Query: 261 AYTKDEAQISLRRLRD-HPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319
+ +++A++++ L PG A +F LAEA IN+D+I Q+ SE I+FT
Sbjct: 297 SLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS----ISFTVDKED 352
Query: 320 LEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI 379
++A +L ++ E L K+S +G GM+S GVAS F LA+ GINI+ I
Sbjct: 353 ADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI 412
Query: 380 TTSEIKISVLIDSAYTELAVRSLHSCYGL 408
++SEI IS ++D E AVR LH+
Sbjct: 413 SSSEINISFVVDEKDAEKAVRLLHNALFE 441
>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
The Lys-sensitive enzyme of Bacillus subtilis resembles
the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. The
protein slr0657 from Synechocystis PCC6803 is extended
by a duplication of the C-terminal region corresponding
to the beta chain. Incorporation of a second copy of the
C-terminal domain may be quite common in this subgroup
of aspartokinases.
Length = 401
Score = 357 bits (919), Expect = 2e-99
Identities = 174/411 (42%), Positives = 243/411 (59%), Gaps = 17/411 (4%)
Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ-VTSIDN 62
IV KFGGTSV + + I++AA V +E G +V +VVSAMSG TD L E+ + +
Sbjct: 3 IVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAIT 62
Query: 63 ARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVD-EKKI 121
RERD ++S GE++SS L AL+ LG++AI L G + I+TD G A+I + E+++
Sbjct: 63 PRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERL 122
Query: 122 VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181
+ L++ +VV+ GFQG + TTLGRGGSD +A +AAA+KADR DIYTDV G+YTT
Sbjct: 123 LPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTT 182
Query: 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241
DPR+ A + KIS+EE LE+++ GAKV+ R+VE AM + + VRSSF+
Sbjct: 183 DPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPEE----- 237
Query: 242 GTLICSGEDIME-KKVITGIAYTKDEAQISLRRLR--DHPGISASIFSPLAEAHINIDMI 298
GTLI + ME ++ GIA K+ ++++ L G A IF LAE +IN+D+I
Sbjct: 238 GTLITNS---MENPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294
Query: 299 IQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358
Q SE I+ T + ++A+ L D G D ++ E+ L K+S +G GM
Sbjct: 295 SQTPSE----TSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGA 350
Query: 359 AGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
GVAS F L EK INI I +SE IS L+D E AVR LH +
Sbjct: 351 PGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHEVFEES 401
>gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed.
Length = 403
Score = 312 bits (802), Expect = 9e-86
Identities = 156/419 (37%), Positives = 230/419 (54%), Gaps = 26/419 (6%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAM--SGE---TDRLAELCR 55
M IV KFGGTSV+ + + A +K+ + G +V +VVSAM G+ TD L L
Sbjct: 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVG 60
Query: 56 QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115
+ S + RE+D+++S GE +SS + L GI+A++L G Q I+TD A+I
Sbjct: 61 EEFSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIE 120
Query: 116 VDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV 175
V+ +I+ L++ VVV+ GFQG++ + +TTLGRGGSDT+A A+ A+KA+ DIYTDV
Sbjct: 121 VNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDV 180
Query: 176 CGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDH 235
GI T DPRI A L+ +S+ E+ +M+ GAKV+ R+VE+AM + L +RS++ D
Sbjct: 181 DGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS 240
Query: 236 GQQEQLGTLICS-----GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAE 290
GTLI S G +E+++ITGIA+ + QI ++ + + +F LAE
Sbjct: 241 -----PGTLITSLGDAKGGIDVEERLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAE 295
Query: 291 AHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISA 350
A I++D I N+ FT EKA +L EN+G +N K+S
Sbjct: 296 AGISVDFI--NIFPTEV----VFTVSDEDSEKAKEIL----ENLGLKP-SVRENCAKVSI 344
Query: 351 IGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
+G GM GV + L+E+GI I S I VL+ E AV +LH + L
Sbjct: 345 VGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALHDAFELS 403
>gnl|CDD|180515 PRK06291, PRK06291, aspartate kinase; Provisional.
Length = 465
Score = 279 bits (716), Expect = 8e-76
Identities = 171/473 (36%), Positives = 247/473 (52%), Gaps = 76/473 (16%)
Query: 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL---AELC----- 54
R+VMKFGGTSV + + IR A VKR G EV +VVSAM+G TD L AE
Sbjct: 2 RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRD 61
Query: 55 -------------RQVTSIDNA------------------------------------RE 65
R +I+ A R
Sbjct: 62 IAKVKDFIADLRERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRS 121
Query: 66 RDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR-ICRVDE---KKI 121
RD ++S GE++S+ ++ AL+ LGI++++L G + I+TDS G AR + + E +++
Sbjct: 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERL 181
Query: 122 VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181
LK+ + V+TGF G + + +TTLGRGGSD SA I AA+ AD I+TDV G+ TT
Sbjct: 182 EPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTT 241
Query: 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241
DPRI P+A ++ KIS+ E +E+S GAKV+ R++E AM + + V+++F E
Sbjct: 242 DPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFN----PEFP 297
Query: 242 GTLICSGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMII 299
GTLI S + K+V+ + K+ A I++ + PG +A IFS LAE +N+ MI
Sbjct: 298 GTLITSDSE-SSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356
Query: 300 QNVSEDGQYVDITFTTPSSSLEKALAVL-SDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358
Q SE +I+ + LEKAL L + E + DV +D V ++ +G GM
Sbjct: 357 QGSSE----SNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCV-VAVVGAGMAGT 411
Query: 359 AGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLD 409
GVA F L E GINIK I+ +SE+ IS ++D E AV+ LH + L
Sbjct: 412 PGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFILG 464
>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated.
Length = 392
Score = 264 bits (676), Expect = 4e-71
Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 30/406 (7%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
M IV KFGGTSV +I+ I++ A H+ + + G +V +VVSAM+GET+RL L +QV S+
Sbjct: 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSV 60
Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
ARE DV++S GEQVS L+ + L LG A SL G Q I+TD+ H A I +D
Sbjct: 61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTST 120
Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180
I L++ Q+V++ GFQG + + +TTLGRGGSDT+AVA+A A+ AD C I+TDV G+YT
Sbjct: 121 ITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYT 180
Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240
DPR+ A + I F M M+ GAKV+ + SV+ A + + L V SSFE G+
Sbjct: 181 CDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GE--- 236
Query: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300
GTLI + + + GIA +D A I + + L + + + +
Sbjct: 237 -GTLI---KGEAGTQAVCGIALQRDLALIE---------VESESLPSLTKQCQMLGIEVW 283
Query: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360
NV E+ I + K V D I++ +++ ++ +G+
Sbjct: 284 NVIEEADRAQI--VIKQDACAKLKLVFDDK--------IRNSESVSLLTLVGLEANGMVE 333
Query: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCY 406
A LA+ GI+++ +T +++D A + A LH Y
Sbjct: 334 HACNL---LAQNGIDVRQCSTEPQSSMLVLDPANVDRAANILHKTY 376
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional.
Length = 819
Score = 217 bits (555), Expect = 4e-57
Identities = 126/466 (27%), Positives = 217/466 (46%), Gaps = 79/466 (16%)
Query: 5 VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVS---------------AMSGETD- 48
V+KFGGTSVAN + A ++ + Q VA+V+S A G+
Sbjct: 3 VLKFGGTSVANAERFLRVADIIESNARQEQ-VAVVLSAPAKVTNHLVAMIEKAAKGDDAY 61
Query: 49 -----------------------------------RLAELCRQVTSIDNARE-----RDV 68
A+L + I E
Sbjct: 62 PEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAA 121
Query: 69 VISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTH--LK 126
+IS GE++S +M L++ G + ++ ++ D + + + + + + +
Sbjct: 122 IISRGERLSIAIMAAVLEARGHDVTVIDPREL-LLADGHYLESTVDIAESTRRIAASFIP 180
Query: 127 KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186
V+++ GF + + TLGR GSD SA +AA + AD C+I+TDV G+YT DPR+
Sbjct: 181 ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVV 240
Query: 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246
P A L+K +S++E +E+S GAKV+ R++ +++ ++++F GTLI
Sbjct: 241 PDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAP----GTLI- 295
Query: 247 SGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSE 304
E + + GI+ + A ++ ++ G+++ +F+ L+ A I++ +I Q+ SE
Sbjct: 296 GAESDEDSLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE 355
Query: 305 DGQYVDITFTTPSSSLEKALAVLSDN-----KENIGYDVIQHEDNLVKISAIGIGMQSYA 359
I+F P S KA L + KE + + ++ E+NL IS +G GM+++
Sbjct: 356 Y----SISFCVPQSDAAKAKRALEEEFALELKEGL-LEPLEVEENLAIISVVGDGMRTHP 410
Query: 360 GVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLH 403
G+A+ FF L INI AI +SE ISV+ID+ A+R+ H
Sbjct: 411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACH 456
>gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated.
Length = 448
Score = 206 bits (528), Expect = 6e-54
Identities = 133/465 (28%), Positives = 202/465 (43%), Gaps = 85/465 (18%)
Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGET---------------- 47
+V KFGGTSVA+ D + +A V + +V+SA +G T
Sbjct: 2 VVAKFGGTSVADFDAMNRSADIVLSNPNTR---LVVLSASAGVTNLLVALAEGAEPGDER 58
Query: 48 --------------------------------DRLAELCRQVTSIDNARERDVVISTGEQ 75
+ + L + + D ++S GE
Sbjct: 59 LALLDEIRQIQYAILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGEL 118
Query: 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR----ICRVDEKKIVTHLKKKQVV 131
+S+ L V L+ G+QA ++ + TD G A ++ + L + VV
Sbjct: 119 MSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAELAQEQLLPLLAEGVV 177
Query: 132 VITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHL 191
V GF G TTLGRGGSD SA +A A+ A R +I+TDV GIYTTDPRI P A
Sbjct: 178 VTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKR 237
Query: 192 MKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDI 251
+ +ISFEE EM++ GAKV+ ++ A+ + +FV SS + E GT IC D
Sbjct: 238 IDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKD----PEAGGTWIC--NDT 291
Query: 252 MEKKVITGIAYTKDEAQISLRRLR---DHPGISASIFSPLAEAHINIDMIIQNVSEDGQY 308
+ IA +++ ++L L G A +F LA I++D+I SE
Sbjct: 292 ENPPLFRAIALRRNQTLLTLHSLNMLHAR-GFLAEVFGILARHKISVDLI--TTSE---- 344
Query: 309 VDITFT---TPSSSLEKAL---AVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362
V ++ T T S+S L A+L++ + +V E+ L ++ IG + GVA
Sbjct: 345 VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEV---EEGLALVALIGNNLSKACGVA 401
Query: 363 SAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSC 405
F L + NI+ I S + L+ + E V++LH
Sbjct: 402 KRVFGVL--EPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQN 444
>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase.
Length = 521
Score = 126 bits (319), Expect = 8e-30
Identities = 126/482 (26%), Positives = 203/482 (42%), Gaps = 107/482 (22%)
Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL------AELCR-- 55
+VMKFGG+SVA+ + +R A + D +V+SAM T+ L A C
Sbjct: 54 VVMKFGGSSVASAERMREVADLILSFPDERP--VVVLSAMGKTTNNLLLAGEKAVSCGVT 111
Query: 56 QVTSIDN-------------------------------------------ARERDVVIST 72
V+ I+ R RD ++S
Sbjct: 112 NVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171
Query: 73 GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKK---- 128
GE++S+ + L +G++A + I +T A I + L
Sbjct: 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDD 231
Query: 129 -QVVVITGFQGLSHDN-SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186
V V+TGF G ++TTLGRGGSD +A I A+ ++ DV G+ T DPRI
Sbjct: 232 PAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIY 291
Query: 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246
P A + ++F+E E++ GA+V+ +S+ A + + V++S+ GTLI
Sbjct: 292 PNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAP----GTLIT 347
Query: 247 SGEDIMEKKVITGIAYTKDEAQ---ISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVS 303
D M K V+T I ++ +S R L + G A +FS + I++D++ S
Sbjct: 348 KTRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQY-GFLAKVFSTFEDLGISVDVVA--TS 403
Query: 304 EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHE-DNLVK--------------- 347
E V I+ T S L ++IQ E D+LV+
Sbjct: 404 E----VSISLTLDPSKLW-------------SRELIQQELDHLVEELEKIAVVNLLQGRS 446
Query: 348 -ISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHS 404
IS IG +S + F + L G+N++ I+ S++ IS++++ E VR+LHS
Sbjct: 447 IISLIGNVQRSSLILEKVFRV-LRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505
Query: 405 CY 406
+
Sbjct: 506 AF 507
>gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated.
Length = 341
Score = 124 bits (314), Expect = 3e-29
Identities = 96/325 (29%), Positives = 149/325 (45%), Gaps = 67/325 (20%)
Query: 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETD---RLAE------- 52
IV+KFGG+SV A VK + EV +VVSA+ G TD +LAE
Sbjct: 5 MIVVKFGGSSVR--YDFEEALELVKYLSE-ENEVVVVVSALKGVTDKLLKLAETFDKEAL 61
Query: 53 --------------------LCRQVTSIDNARE-------RDVVISTGEQVSSGLMVLAL 85
L + + N+R RD ++S GE++S+ L AL
Sbjct: 62 EEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEAL 121
Query: 86 QSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTH-------LKKKQVVVITGFQG 138
++ GI+ + W+I + G A I D KK + L++ +V V+ GF G
Sbjct: 122 ENEGIKGKVVDPWEI-LEAKGSFGNAFI---DIKKSKRNVKILYELLERGRVPVVPGFIG 177
Query: 139 LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFE 198
+ + TLGRGGSD SAVA+ + A I +DV GIYT DP++ P A L+ +S++
Sbjct: 178 -NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYD 236
Query: 199 EMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC---SGEDIMEKK 255
E L + LG K + +++E +F R+ ++GTL+ SG I+ K
Sbjct: 237 EALIAAKLGMKALHWKAIEPVKGKIPIIFGRTR------DWRMGTLVSNESSGMPILVHK 290
Query: 256 VITGIAYTKDEAQISLRRLRDHPGI 280
V ++ A+I + + + G
Sbjct: 291 VG------EEHAEILVVGVEEEIGY 309
>gnl|CDD|181617 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 118 bits (299), Expect = 2e-27
Identities = 113/457 (24%), Positives = 194/457 (42%), Gaps = 72/457 (15%)
Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSA--------------------- 42
V+KFGG+S+A+ + + VK + +R +VVSA
Sbjct: 2 KVVKFGGSSLASAEQFKKVLNIVKSDPER---KIVVVSAPGKRFKEDTKVTDLLILYAEA 58
Query: 43 -MSGE---------TDRLAELCR--------------------QVTSIDNARERDVVIST 72
++GE R AE+ + + S + R D +
Sbjct: 59 VLAGEDYEDIFEAIIARYAEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKAR 118
Query: 73 GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVV 132
GE +++ L+ L GI A + + I+ G A++ + + + +V
Sbjct: 119 GEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLV 178
Query: 133 ITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLM 192
I GF G++ D + T RGGSD + +A +KAD + +TDV GIY +PRI +
Sbjct: 179 IPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSI 238
Query: 193 KKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIM 252
K+I++ EM E+S G V ++ A Y+ + + ++ + GTLI D
Sbjct: 239 KEITYREMRELSYAGFSVFHDEALIPA--YRGGIPINIKNTNNPEDP--GTLIVPDRDNK 294
Query: 253 EKKVITGIAYTKDEAQISLRR--LRDHPGISASIFSPLAEAHINIDMI---IQNVSEDGQ 307
K ITGIA K I + + + G + L + I+ + + I ++S
Sbjct: 295 NKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLS---- 350
Query: 308 YVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFL 367
I + +K +L++ K+ + D ++ E +L I +G GM+ GVA+
Sbjct: 351 ---IIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITK 407
Query: 368 CLAEKGINIKAI--TTSEIKISVLIDSAYTELAVRSL 402
LAE INI+ I +SEI I + + E AV+++
Sbjct: 408 ALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAI 444
Score = 48.6 bits (117), Expect = 3e-06
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKEN 333
+R G++A I LAEA+INI MI Q SE + I F + EKA+ +
Sbjct: 395 MRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNEDAEKAVKAI------ 444
Query: 334 IGYDVIQHEDNL 345
Y+ E +
Sbjct: 445 --YNAFFKEVLV 454
>gnl|CDD|135659 PRK05925, PRK05925, aspartate kinase; Provisional.
Length = 440
Score = 114 bits (287), Expect = 5e-26
Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 59/298 (19%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR----- 55
MA +V KFGGTS+ + IR + +E +VVSA++G TD L E CR
Sbjct: 1 MAPLVYKFGGTSLGTAESIRRVCDIICKEKPS----FVVVSAVAGVTDLLEEFCRLSKGK 56
Query: 56 ---------------------------------------QVTSIDNARERDVVISTGEQV 76
+++S D AR +++ GE +
Sbjct: 57 REALTEKIREKHEEIAKELGIEFSLSPWWERLEHFEDVEEISSEDQAR----ILAIGEDI 112
Query: 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--ICRVDEKKIVTHLKKKQVVVIT 134
S+ L+ + + L+ Q+ I+TD + A + + L++ + ++
Sbjct: 113 SASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQ 171
Query: 135 GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194
GF G + T LGRGGSD SA IA KA IYTDV GIYT DP+I A L+ +
Sbjct: 172 GFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPE 231
Query: 195 ISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIM 252
+SFEEM ++S GAKV+ ++ + + +FV S+F+ + GT I + + +
Sbjct: 232 LSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFD----VTKGGTWIYASDKEV 285
>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 108 bits (272), Expect = 2e-24
Identities = 103/464 (22%), Positives = 192/464 (41%), Gaps = 81/464 (17%)
Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ------- 56
+V+KFGGTSV+ + A V++ + G V +VVSA+SG ++ L +
Sbjct: 10 VVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSA 69
Query: 57 --VTSID--------------------------------------NARERDVVISTGEQV 76
V +I + R + V+ GE +
Sbjct: 70 SRVAAIRQRHRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELL 129
Query: 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--------ICRVDEKKIVTHLKKK 128
S+ L L++ G+ L + + + D +
Sbjct: 130 STTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQP 189
Query: 129 QVVVIT-GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEP 187
V+IT GF + D LGRGGSDTSA AA + A R +I+TDV G+++ +P+ P
Sbjct: 190 AQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVP 249
Query: 188 KAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC- 246
A L+ ++ ++E E+++ GAKV+ RS++ + + + + + + GT I
Sbjct: 250 DARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDT----ERPDLSGTSIDG 305
Query: 247 SGEDIMEKKVI---TGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVS 303
E + K I GI E +++ G A +F+ + +++D+I + S
Sbjct: 306 DAEPVPGVKAISRKNGIVLVSMETIGMWQQV----GFLADVFTLFKKHGLSVDLI--SSS 359
Query: 304 EDGQYVDITFT-TPSSSL--EKALAVLSDNKENIG-YDVIQHEDNLVKISAIGIGMQSYA 359
E ++T + PS +L LA LS + I +I +S +G GM+S
Sbjct: 360 E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVKII---VPCAAVSLVGRGMRSLL 412
Query: 360 GVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH 403
+ + +++ + ++++ ++ +ID + + + LH
Sbjct: 413 HKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH 456
>gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional.
Length = 810
Score = 105 bits (264), Expect = 3e-23
Identities = 103/465 (22%), Positives = 176/465 (37%), Gaps = 85/465 (18%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL---------- 50
M R + KFGG+S+A+ C R A + E + ++ +VVSA T++L
Sbjct: 10 MGRQLHKFGGSSLADAKCYRRVA-GILAEYSQPDDL-VVVSAAGKTTNQLISWLKLSQTD 67
Query: 51 ---------------AELCRQVTSIDNARE------------------------RDVVIS 71
+L + + AR V+
Sbjct: 68 RLSAHQVQQTLRRYQQDLIEGLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVG 127
Query: 72 TGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK--------IVT 123
GE S+ LM L G+ A L A +VDE +
Sbjct: 128 HGEVWSARLMAALLNQQGLPAAWLDARSFLRAER-----AAQPQVDEGLSYPLLQQLLAQ 182
Query: 124 HLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP 183
H K+ +V+TGF + LGR GSD SA I A +R I++DV G+Y+ DP
Sbjct: 183 HPGKR--LVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADP 240
Query: 184 RIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGT 243
R A L+ + +E E++ L A V+ R+++ + L +R S++ ++
Sbjct: 241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIER 300
Query: 244 LICSGEDIMEKKVITGIAYTKDEAQISLRRLRDH--PGISASIFSPLAEAHINIDMIIQN 301
++ SG +++T D I L+ H + L A + +
Sbjct: 301 VLASGT---GARIVT---SLDDVCLIELQVPASHDFKLAQKELDQLLKRAQLR--PLAVG 352
Query: 302 VSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGV 361
V D Q + + +T S + AL +L D ++ + L ++ +G G+
Sbjct: 353 VHPDRQLLQLAYT--SEVADSALKLLDDAALPGE---LKLREGLALVALVGAGVTRNPLH 407
Query: 362 ASAFFLCLAEKGINIKAITTSEIKISV--LIDSAYTELAVRSLHS 404
F+ L K ++ I SE +S+ ++ TE ++ LH
Sbjct: 408 CHRFYQQL--KDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
putative. This family consists of proteins restricted
to and found as paralogous pairs (typically close
together) in species of Pyrococcus, a hyperthermophilic
archaeal genus. Members are always found close to other
genes of threonine biosynthesis and appear to represent
the Pyrococcal form of aspartate kinase. Alignment to
aspartokinase III from E. coli shows that 300 N-terminal
and 20 C-terminal amino acids are homologous, but the
form in Pyrococcus lacks ~ 100 amino acids in between.
Length = 327
Score = 94.5 bits (235), Expect = 4e-20
Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 57/272 (20%)
Query: 4 IVMKFGGTSVANIDCIRSA---ALHVKREVDRGQEVAMVVSAMSGETDRLAELC-----R 55
IV+KFGG+SV R A AL + + + + V +VVSA+ G TD L
Sbjct: 2 IVVKFGGSSV------RYAFEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTFDKS 55
Query: 56 QVTSIDNARE-------------------------------RDVVISTGEQVSSGLMVLA 84
I+ E RD ++S GE++S+
Sbjct: 56 AALEIEEIYEEFAKELGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSA-----V 110
Query: 85 LQSLGIQAISLQGWQIPIMTDSLHGMARI----CRVDEKKIVTHLKKKQVVVITGFQGLS 140
+ + GI + W I G A I + + K + L+ ++ VI GF G +
Sbjct: 111 IFAEGINGKVVDPWDIFFAKGDF-GNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYG-N 168
Query: 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200
+ TLGRGGSD SAVA+ + + I +DV GI+T DP++ P A L+ +S+EE+
Sbjct: 169 LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEI 228
Query: 201 LEMSSLGAKVMQVRSVELAMLYKM-CLFVRSS 231
+ LG K +Q ++ +LA YK+ LF R+
Sbjct: 229 KIAAKLGMKALQWKAADLAKEYKIPVLFGRTR 260
>gnl|CDD|131130 TIGR02075, pyrH_bact, uridylate kinase. This protein, also called
UMP kinase, converts UMP to UDP by adding a phosphate
from ATP. It is the first step in pyrimidine
biosynthesis. GTP is an allosteric activator. In a large
fraction of all bacterial genomes, the gene tends to be
located immediately downstream of elongation factor Ts
and upstream of ribosome recycling factor. A related
protein family, believed to be equivalent in function
and found in the archaea and in spirochetes, is
described by a separate model, TIGR02076.
Length = 233
Score = 59.6 bits (145), Expect = 1e-09
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 53/264 (20%)
Query: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55
R+++K G ++A + D + A +K V G EV +V+ + R
Sbjct: 3 RVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG--------GNIFR 54
Query: 56 QVTSIDNARERDVVISTGEQ------VSSGLMVL-ALQSLGIQAISLQGWQIPIMTDSLH 108
V +A+E + T + V +GL + AL+ LG++ L +P + +S
Sbjct: 55 GV----SAKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESY- 109
Query: 109 GMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADR 168
+K + HL+K +VV+ +G G TT DT+A A I AD
Sbjct: 110 --------IRRKAIKHLEKGKVVIFSGGTGNPF---FTT------DTAAALRAIEINADV 152
Query: 169 CDIYTD-VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLF 227
T+ V G+YT DP+ A + I++ E L+ KVM + + LA + +
Sbjct: 153 ILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIV 209
Query: 228 V-----RSSFEDHGQQEQLGTLIC 246
V + + + +GTL+
Sbjct: 210 VFNIDEPGALKKVILGKGIGTLVS 233
>gnl|CDD|178986 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 55.1 bits (134), Expect = 3e-08
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 62/268 (23%)
Query: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55
R+++K G ++A + + + A +K V+ G EVA+VV G R
Sbjct: 2 RVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG--GNIFRGYIGAA 59
Query: 56 QVTSIDNARERDVVISTGEQVSSGLMV-----LALQSLGIQAISLQGWQIPIMTDSLHGM 110
+D A T + + G++ LALQ +L+ + S M
Sbjct: 60 A--GMDRA--------TADYM--GMLATVMNALALQD------ALERAGVDTRVQSAIPM 101
Query: 111 ARICR-VDEKKIVTHLKKKQVVVITG-----FQGLSHDNSVTTLGRGGSDTSAVAIAAAI 164
++ ++ + HL+K +VV+ F TT DT+A A I
Sbjct: 102 PQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFF--------TT------DTAAALRAEEI 147
Query: 165 KADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKM 224
AD T+V G+Y DP+ +P A +++++E+LE KVM ++ LA K+
Sbjct: 148 GADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKI 204
Query: 225 CLFVRSSFEDHG------QQEQLGTLIC 246
+ V + G + E +GTL+
Sbjct: 205 PIIV-FNMNKPGNLKRVVKGEHIGTLVS 231
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 47.4 bits (113), Expect = 7e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQ 212
+DT+A A +KAD T V GIY DP+ P A + ++F E ++M G KVM
Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190
Query: 213 VRSVELAMLYKMCLFVRSSFEDHG-----QQEQLGTLI 245
+ + Y + + V + FE + E +GTL+
Sbjct: 191 TEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228
>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
Length = 368
Score = 42.3 bits (100), Expect = 2e-04
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 142 DNSVTT--LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196
+++VTT L G +D + +AA AD I +D+ G+Y +PR P A L+K+++
Sbjct: 136 NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVT 192
>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative. This family
consists of the archaeal and spirochete proteins most
closely related to bacterial uridylate kinases
(TIGR02075), an enzyme involved in pyrimidine
biosynthesis. Members are likely, but not known, to be
functionally equivalent to their bacterial counterparts.
However, substantial sequence differences suggest that
regulatory mechanisms may be different; the bacterial
form is allosterically regulated by GTP.
Length = 221
Score = 41.9 bits (99), Expect = 3e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEM---SSLGA 208
D A +A KAD T+V G+Y DP+ +P A K++ EE++E+ SS+ A
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKA 175
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit
the full length of this model, but the ProB-like domain
of delta 1-pyrroline-5-carboxylate synthetase does not
hit the C-terminal 100 residues of this model. The noise
cutoff is set low enough to hit delta
1-pyrroline-5-carboxylate synthetase and other partial
matches to this family.
Length = 363
Score = 37.7 bits (88), Expect = 0.006
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 144 SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196
+ + G +DT + +A + AD + TDV G+Y DPR P A L+ +
Sbjct: 136 ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVE 188
>gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
Length = 372
Score = 35.8 bits (84), Expect = 0.022
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKI 195
DT + +A ++AD + TDV G+YT DPR P A L+ ++
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEV 195
>gnl|CDD|184481 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
Provisional.
Length = 268
Score = 35.3 bits (82), Expect = 0.030
Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 52/235 (22%)
Query: 4 IVMKFGGTSVANID--CIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELC----RQV 57
IV+K GG+ + + I A+L G+ V ++V S E + L E R V
Sbjct: 2 IVVKIGGSVGIDPEDALIDVASL-----WADGERV-VLVHGGSDEVNELLERLGIEPRFV 55
Query: 58 TSIDNARER-------DVVISTGEQVSSGLMVLALQSLGIQAISLQGW-----------Q 99
TS R +V I ++ L V LQSLG+ A+ L G
Sbjct: 56 TSPSGVTSRYTDRETLEVFIMAMALINKQL-VERLQSLGVNAVGLSGLDGGLLEGKRKKA 114
Query: 100 IPIMTDSLHGMARICR---------VDEKKIVTHLKKKQVVVITGFQGLSHDNS-VTTLG 149
+ ++ + G +I R V+ + LK + V+ LS + + G
Sbjct: 115 VRVVEE---GKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPP-ALSEEGEPLNVDG 170
Query: 150 RGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS 204
D +A AIA A+KA+ + +DV G+ DP E L+++I+ EE E+S
Sbjct: 171 ----DRAAAAIAGALKAEALVLLSDVPGLL-RDPPDEGS--LIERITPEEAEELS 218
>gnl|CDD|180538 PRK06349, PRK06349, homoserine dehydrogenase; Provisional.
Length = 426
Score = 35.1 bits (82), Expect = 0.040
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQY--VDITFTTPSSSLEKALAVLSD 329
+ D PG+ A I + AE I+I+ I+Q + V +T T ++L ALA +
Sbjct: 354 LVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEA 412
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
Length = 266
Score = 33.3 bits (77), Expect = 0.10
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 151 GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSS 205
G +D + +A +KAD I +D+ G+Y +PRI P A L +++ EE+L ++
Sbjct: 154 GDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAG 210
>gnl|CDD|128719 smart00442, FGF, Acidic and basic fibroblast growth factor family.
Mitogens that stimulate growth or differentiation of
cells of mesodermal or neuroectodermal origin. The
family play essential roles in patterning and
differentiation during vertebrate embryogenesis, and
have neurotrophic activities.
Length = 126
Score = 32.6 bits (75), Expect = 0.17
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 324 LAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKG 373
L +L D + G +++I A+ +G+ + GVAS +LC+ + G
Sbjct: 15 LQILPDGTVD-GTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCG 63
>gnl|CDD|179175 PRK00942, PRK00942, acetylglutamate kinase; Provisional.
Length = 283
Score = 32.0 bits (74), Expect = 0.28
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEM 203
DT+A AIAAA+ A++ + TDV G+ K L+ +++ E E+
Sbjct: 184 DTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEEL 227
>gnl|CDD|178923 PRK00194, PRK00194, hypothetical protein; Validated.
Length = 90
Score = 30.9 bits (71), Expect = 0.65
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 276 DHPGISASIFSPLAEAHINIDMIIQNVSEDGQY------VDITFTTPS-SSLEKALAVLS 328
D GI A + + LAE ++NI I Q + + Y VDI+ + + L++ L L
Sbjct: 12 DKVGIIAGVSTVLAELNVNILDISQTIMDG--YFTMIMLVDISESKKDFAELKEELEELG 69
Query: 329 DNKENIGYDV-IQHED 343
+ +G + IQHE+
Sbjct: 70 ---KELGVKIRIQHEE 82
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional.
Length = 247
Score = 30.2 bits (68), Expect = 0.90
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 120 KIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD-VCGI 178
+ V HL +V+ G G VTT D +V A + +D + V G+
Sbjct: 117 RAVHHLDNGYIVIFGGGNGQPF---VTT------DYPSVQRAIEMNSDAILVAKQGVDGV 167
Query: 179 YTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238
+T+DP+ A + +K+++ +++ +VM ++ LA Y + V +F++ G
Sbjct: 168 FTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHV-FNFDEPGVM 223
Query: 239 EQLGTLICSGEDI 251
+ IC GE +
Sbjct: 224 RR----ICLGEHV 232
>gnl|CDD|181679 PRK09181, PRK09181, aspartate kinase; Validated.
Length = 475
Score = 29.9 bits (68), Expect = 1.4
Identities = 80/366 (21%), Positives = 152/366 (41%), Gaps = 71/366 (19%)
Query: 66 RDVVISTGEQVSSGLMVLALQSLGIQA--ISLQGWQIPIMTDSLHGMARICRVDEKKIVT 123
R+++ S GE S+ L LQ+ G+ A + L GW D +DE +I
Sbjct: 139 REMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWD-----DDDPL-----TLDE-RIKK 187
Query: 124 HLKK----KQVVVITGF----QGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV 175
K K++ ++TG+ +GL T RG S+ + IA AD I+ +
Sbjct: 188 AFKDIDVTKELPIVTGYAKCKEGLMR-----TFDRGYSEMTFSRIAVLTGADEAIIHKE- 241
Query: 176 CGIY---TTDPRI--EPKAHLMKKISFEEMLEMSSLG--------AKVMQVRSVELAMLY 222
Y + DP++ E K + + +++ ++++LG AK ++ + L
Sbjct: 242 ---YHLSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLR--- 295
Query: 223 KMCLFVRSSFE-DHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISL--RRLRDHPG 279
++++FE +H GTLI + + + E+ + IA + + + + + G
Sbjct: 296 -----IKNTFEPEHP-----GTLI-TKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDG 344
Query: 280 ISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVI 339
I L ++ N + Y+ +L++ +A L K +V
Sbjct: 345 YDLEILEILTRHKVSYISKATNANTITHYLW----GSLKTLKRVIAELE--KRYPNAEVT 398
Query: 340 QHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI--TTSEIKISVLIDSAYTEL 397
+ +SAIG + +A A LAE GIN+ A+ + ++ + ++D E
Sbjct: 399 VR--KVAIVSAIGSNIAVPGVLAKA-VQALAEAGINVLALHQSMRQVNMQFVVDEDDYEK 455
Query: 398 AVRSLH 403
A+ +LH
Sbjct: 456 AICALH 461
Score = 28.7 bits (65), Expect = 2.7
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAE 52
M V K GGTS++ D + + R+ + VVSA G TD L E
Sbjct: 2 MMHTVEKIGGTSMSAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLE 53
>gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase.
Length = 309
Score = 29.3 bits (66), Expect = 1.7
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTT--DPRIEPKAHLMKKISFEEMLEM 203
+DT+A IAAA+ A++ + TDV G+ DP L+K++ + + ++
Sbjct: 207 ADTAAGEIAAALGAEKLILLTDVAGVLEDKDDP-----GSLVKELDIKGVRKL 254
>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional.
Length = 249
Score = 28.8 bits (64), Expect = 2.5
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 41/223 (18%)
Query: 1 MARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSA---MSGETDRL 50
+ RI++K G S++ N++ + +K + G E+A+VV + G
Sbjct: 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANF 74
Query: 51 AELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMT-DSLHG 109
R+ T+ + +++ + LAL+ + I +G + + + G
Sbjct: 75 GNKIRRATA-----------DSMGMIATMINALALRDMLIS----EGVDAEVFSAKGVDG 119
Query: 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169
+ ++ E L K +V++ G G + VTT DT+A A I AD
Sbjct: 120 LLKVASAHE--FNQELAKGRVLIFAGGTG---NPFVTT------DTTASLRAVEIGADAL 168
Query: 170 DIYTDVCGIYTTDPRIEPKAHLMKKISFEEM----LEMSSLGA 208
T V G+Y DP A K++F E+ L + LGA
Sbjct: 169 LKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGA 211
>gnl|CDD|184346 PRK13820, PRK13820, argininosuccinate synthase; Provisional.
Length = 394
Score = 28.7 bits (65), Expect = 2.8
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 304 EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIG---------IG 354
++ + V+I F E+ + V + ++ G ++I+ + + +G +G
Sbjct: 210 DEPEIVEIEF-------EEGVPVAINGEKMDGVELIRKLNEIAGKHGVGRTDMMEDRVLG 262
Query: 355 MQS---YAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSL 402
++S Y A A L A K + +T E+K ++DS + ELA L
Sbjct: 263 LKSRENYEHPA-ATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYEGL 312
>gnl|CDD|162026 TIGR00761, argB, acetylglutamate kinase. This model describes
N-acetylglutamate kinases (ArgB) of many prokaryotes and
the N-acetylglutamate kinase domains of multifunctional
proteins from yeasts. This enzyme is the second step in
the "acetylated" ornithine biosynthesis pathway. A
related group of enzymes representing the first step of
the pathway contain a homologous domain and are excluded
from this model.
Length = 231
Score = 28.4 bits (64), Expect = 3.2
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 81 MVLALQSLGIQAISLQGWQIPIMT------DSLHGMARICRVDEKKIVTHLKKKQVVVIT 134
+V L GI AI L G + T + L + I +V++ + LK + VI+
Sbjct: 82 LVALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVIS 141
Query: 135 GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194
L+ + + +DT+A A+AAA+ A++ + TDV GI D L+ +
Sbjct: 142 SL-ALTAEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGD-----GQSLISE 192
Query: 195 ISFEE 199
I EE
Sbjct: 193 IPLEE 197
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
Length = 307
Score = 27.9 bits (63), Expect = 5.0
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS----SLGAK 209
D +A +A + AD I TDV +Y D +P + + + +E+ E+ S+G K
Sbjct: 206 DLAAALLAEQLDADLLLILTDVDAVY-LDWG-KPTQRAIAQATPDELRELGFAAGSMGPK 263
Query: 210 V 210
V
Sbjct: 264 V 264
>gnl|CDD|183162 PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase; Provisional.
Length = 281
Score = 27.7 bits (62), Expect = 5.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 47 TDRLAE-LCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISL 95
TD L + S D R ++ S G V++ ++VLAL +L + + L
Sbjct: 216 TDELDAIFFGRGVSFD----RPIIASCGSGVTAAVVVLALATLDVPNVKL 261
>gnl|CDD|178039 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 27.8 bits (62), Expect = 5.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQV 213
D+ A +A +KAD + +DV G+YT P +P + L+ E+ + + G K
Sbjct: 178 DSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVG 236
Query: 214 R 214
R
Sbjct: 237 R 237
>gnl|CDD|185667 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional.
Length = 264
Score = 27.7 bits (61), Expect = 5.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 141 HDNSVTTLGR---GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKI 195
++N T L G +D + +A KAD I +D+ G YT +PR A + +
Sbjct: 134 NENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVV 191
>gnl|CDD|180460 PRK06196, PRK06196, oxidoreductase; Provisional.
Length = 315
Score = 27.3 bits (61), Expect = 8.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 277 HPGISASIFSPLAEAHINI-DMIIQN-VSEDGQYVDITFTTPS 317
HPG I +PL + H+ + + V E G +D F TP+
Sbjct: 210 HPG---GILTPL-QRHLPREEQVALGWVDEHGNPIDPGFKTPA 248
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.133 0.367
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,376,371
Number of extensions: 408751
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 74
Length of query: 411
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 315
Effective length of database: 3,920,105
Effective search space: 1234833075
Effective search space used: 1234833075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)