HHsearch alignment for GI: 254780874 and conserved domain: COG0216
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=989.35 Aligned_cols=356 Identities=57% Similarity=0.930 Sum_probs=345.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 967868989999999999999853853---15799999999987999999999999999989999999720378535665
Q gi|254780874|r 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 (357)
Q Consensus 1 m~mi~~~kL~~l~~rl~ELE~~Lsdp~---~w~d~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~e 77 (357)
T Consensus 1 ~~~~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~e 79 (363)
T COG0216 1 MKPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMRE 79 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHH
T ss_conf 971589999999999999999853963336999999999999888899999999999999999999998356-8878999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
Q ss_conf 43322233200057788899986400011355403788622688521788999999999999876498400132113544
Q gi|254780874|r 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 (357)
Q Consensus 78 lAeeEl~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~ 157 (357)
T Consensus 80 ma~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~ 159 (363)
T COG0216 80 MAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESEL 159 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 99999999999899999999986289998877776899706888159999999999999999975798799941586667
Q ss_pred CCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCC-CCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 77211137775031112100024650267612545678511016888853033433-22245434799985288875200
Q gi|254780874|r 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 (357)
Q Consensus 158 aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~-~~~i~~~dl~i~~~rssG~GGQ~ 236 (357)
T Consensus 160 GG~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQh 239 (363)
T COG0216 160 GGYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQH 239 (363)
T ss_pred CCCEEEEEEEECCCHHHHHHHCCCCCCEECCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHCEEEEEECCCCCCCC
T ss_conf 88048999984365455410315765221066655788314000168862787753346447788347655437898887
Q ss_pred CCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf 0632121588964984488-843654135899999999999999999999999987446522467423822104489981
Q gi|254780874|r 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 (357)
Q Consensus 237 vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~r 315 (357)
T Consensus 240 VNtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQnR 319 (363)
T COG0216 240 VNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQNR 319 (363)
T ss_pred CCCCCHHHEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
T ss_conf 66513110143147736998446245665199999999999999999999999998888733777425421035788776
Q ss_pred EEEEECCCEECCHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1243216441787787288-66999999999999999874059
Q gi|254780874|r 316 ITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 (357)
Q Consensus 316 v~DhR~~~~~~~~~~~l~G-~l~~~i~~~~~~~~~~~l~~~~e 357 (357)
T Consensus 320 VTDHRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~~ 362 (363)
T COG0216 320 VTDHRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELGE 362 (363)
T ss_pred CCCHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5101036610458888646857899999999999999987304