HHsearch alignment for GI: 254780874 and conserved domain: TIGR00019
>TIGR00019 prfA peptide chain release factor 1; InterPro: IPR004373 This family describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognise and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cut-off for this model. RF-1 does not have a translational frameshift.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1123.96 Aligned_cols=353 Identities=55% Similarity=0.907 Sum_probs=344.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 689899999999999998538531579---99999999879999999999999999899999997203785356654332
Q gi|254780874|r 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 (357)
Q Consensus 5 ~~~kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAee 81 (357)
T Consensus 6 l~~kL~~~~~~~~eL~~~L~dp~v~~d~~k~~~~~ke~~~l~~i~~~~~~~~~~~~~~~~A~~~l~E~~~D~El~elak~ 85 (373)
T TIGR00019 6 LLEKLESLEERYEELEELLSDPEVISDQDKLRKLSKEYSQLEEIVDKYEEYKKAQEDLKEAKELLEEKGDDKELRELAKE 85 (373)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999998506863113679999998862065689999999999999999999999742588658999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC
Q ss_conf 22332000577888999864000113554037886226885217889999999999998764984001321135447721
Q gi|254780874|r 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 (357)
Q Consensus 82 El~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik 161 (357)
T Consensus 86 El~~l~~~~~~LE~~Lk~LLlPkDPND~kNv~lEiRaGtGGdEAalFagDLfrMY~rYAE~kgWkV~i~s~~~~~~GGyK 165 (373)
T TIGR00019 86 ELEELEKEIEELEEQLKILLLPKDPNDEKNVILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSANETELGGYK 165 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCE
T ss_conf 99999988888999999726886976695348885079971479999987999988887437988999741157778703
Q ss_pred EEEEEE--EC-------CCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCC-CCCCCCEEEEEEECCCC
Q ss_conf 113777--50-------311121000246502676125456785110168888530334332-22454347999852888
Q gi|254780874|r 162 EIVATI--SG-------RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASG 231 (357)
Q Consensus 162 ~v~~~I--~G-------~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~-~~i~~~dl~i~~~rssG 231 (357)
T Consensus 166 E~I~~ish~GasdGdav~gVys~LKFEsGvHRVQRVP~TES~GRiHTSaaTVAvlPE~eE~E~v~InP~DLrIDtfRsSG 245 (373)
T TIGR00019 166 EVIAEISHKGASDGDAVDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVLPEVEEVEEVKINPKDLRIDTFRSSG 245 (373)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECHHHEEECCCCCCCCCCCCCHHHCEEEEEECCC
T ss_conf 25766530578886303315654001058730310023137692510011101057779889755576056484765278
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf 752000632121588964984488-8436541358999999999999999999999999874465224674238221044
Q gi|254780874|r 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 (357)
Q Consensus 232 ~GGQ~vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~ 310 (357)
T Consensus 246 aGGQ~VNtTdSAVRITHLPTGIVV~CQdErSQ~kNK~kAmk~L~ArL~~~~~~~~~~~~a~~RksqVGSGDRSErIRTYN 325 (373)
T TIGR00019 246 AGGQHVNTTDSAVRITHLPTGIVVSCQDERSQHKNKDKAMKILRARLYEKEQEKQQAEQASDRKSQVGSGDRSERIRTYN 325 (373)
T ss_pred CCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
T ss_conf 98888665200002002688417885478520567999999999999999999999998750466156654000355678
Q ss_pred CCCCCEEEEECCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89981124321644178778728866999999999999999874059
Q gi|254780874|r 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 (357)
Q Consensus 311 ~~~~rv~DhR~~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e 357 (357)
T Consensus 326 fPQNRvTDHRInlTly~L~~~l~G~LD~~i~aL~~~~q~~~L~~~~~ 372 (373)
T TIGR00019 326 FPQNRVTDHRINLTLYKLDEVLEGDLDEIIEALIAEDQAQQLAELSE 372 (373)
T ss_pred CCCCCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98885304344010430456630672157789999999999998612