HHsearch alignment of GI: 254780874 and MMDB domain: 1j26_A_
>1j26_A (A:) Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.85 E-value=1.1e-21 Score=176.67 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=72.2
Q ss_pred EEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-------------------------CCCCEEE
Q ss_conf 888853033-43322245434799985288875200063212158896-------------------------4984488
Q gi|254780874|r 202 ATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH-------------------------IPTGIMV 255 (357)
Q Consensus 202 a~V~V~P~~-~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H-------------------------~ptgi~v 255 (357)
|+|.++|.. +..++.|+++||+|.|+|||||||||||||+|+|+|+| .|+||+|
T Consensus 1 a~~~~~~~~~~~~~~~Ip~~~l~~~~~RssGpGGQ~VNK~~skv~l~~~~~~~~~l~~~~~~~l~~~~~~r~~~~~~l~i 80 (112)
T 1j26_A 1 GSSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80 (112)
T ss_dssp CCCCSCSSCCCSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEE
T ss_pred CCCCCCHHHHHHHCCCCCHHHEEEEEEECCCCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98886501133404704878937998876799998444303030589762323579999999999986373666983999
Q ss_pred E-ECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8-43654135899999999999999999
Q gi|254780874|r 256 T-SSEKSQHQNRLRAMKVLRARLYDVER 282 (357)
Q Consensus 256 ~-~~eRsQ~~Nk~~A~~~L~~~l~~~~~ 282 (357)
. +.+|||++||+.|+++|++.|++...
T Consensus 81 ~~~~~RsQ~~N~~~a~~kL~~~l~~a~~ 108 (112)
T 1j26_A 81 TSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9887679999999999999999999748