HHsearch results for GI: 254780874 and protein with PDBid: 1gqe_A

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00  E-value=0  Score=938.62  Aligned_cols=331  Identities=34%  Similarity=0.548  Sum_probs=307.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             899999999999998538531579---99999999879999999999999999899999997203785356654332223
Q gi|254780874|r    8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL   84 (357)
Q Consensus         8 kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~   84 (357)
                      .++.++.|+.+|+.+|++|+||+|   +++++|+++.|+++++.|+.|.+...++.++.+|+.++ +|+++.+++..++.
T Consensus        26 d~d~~~~rl~eLe~~l~~p~~w~D~~~a~kl~ke~~~L~~~v~~~~~l~~~~~dl~el~el~~ee-~d~e~~~e~~~el~  104 (365)
T 1gqe_A           26 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA-DDEETFNEAVAELD  104 (365)
T ss_dssp             THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf             98999999999999864972554999999999999999999999999999999899999887601-32788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEE
Q ss_conf             32000577888999864000113554037886226885217889999999999998764984001321135447721113
Q gi|254780874|r   85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV  164 (357)
Q Consensus        85 ~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~  164 (357)
                      .+...++.    |+..++|+||+|.+||||||||||||+||||||+||||||+|||+++||+++++++++|+.||||+|+
T Consensus       105 ~l~~~l~~----le~~ll~~d~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~ryAE~kgwk~evid~~~~e~gGik~v~  180 (365)
T 1gqe_A          105 ALEEKLAQ----LEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT  180 (365)
T ss_dssp             HHHHHHHH----HGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE
T ss_pred             HHHHHHHH----HHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEE
T ss_conf             99999999----87513689966555745999847996899999999999999999985992589861677767327999


Q ss_pred             EEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf             7775031112100024650267612545678511016888853033-433222454347999852888752000632121
Q gi|254780874|r  165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA  243 (357)
Q Consensus       165 ~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~sa  243 (357)
                      |.|+|+||||+||+|+||||||||||||++||||||||||+|+|++ ++++++|+|+||||||||||||||||||||+||
T Consensus       181 ~~I~G~~aYg~Lk~EsGVHRvqRvp~tes~gR~HTS~asV~V~P~~~~~~~i~i~~~Dl~id~~rssG~GGQ~vNkt~sa  260 (365)
T 1gqe_A          181 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA  260 (365)
T ss_dssp             EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE
T ss_pred             EEEECCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCEECCHHHEEEEEEECCCCCCCCCCCCCCE
T ss_conf             99974672566631487303675688688884798667899825788764043165782798655688876765653434


Q ss_pred             EEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCEEECCCCCCCEEEEE
Q ss_conf             588964984488-84365413589999999999999999999999998744--652246742382210448998112432
Q gi|254780874|r  244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHR  320 (357)
Q Consensus       244 vri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r--~~~~g~~~rs~~iRtY~~~~~rv~DhR  320 (357)
                      |||||+||||+| ||+|||||+||++||++|++|||+++.+++.++....|  +.++|   ||+||||||||||||||||
T Consensus       261 Vri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~IRtYnf~~~rVtDhR  337 (365)
T 1gqe_A          261 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG---WGSQIRSYVLDDSRIKDLR  337 (365)
T ss_dssp             EEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCC---SCSEEEEEEGGGTEEEETT
T ss_pred             EEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCEECC
T ss_conf             8999707864999606020477899999999999999999999999999884311355---7698567548998140306


Q ss_pred             CCCEECCHHHHHCCCHHHHHHHHHHH
Q ss_conf             16441787787288669999999999
Q gi|254780874|r  321 INLTLYKLEYVLQGYIDDIINPLLTA  346 (357)
Q Consensus       321 ~~~~~~~~~~~l~G~l~~~i~~~~~~  346 (357)
                      ||++++|+++||+|+||+||++|+.+
T Consensus       338 ~~~~~~~~~~vl~G~ld~~i~a~l~~  363 (365)
T 1gqe_A          338 TGVETRNTQAVLDGSLDQFIEASLKA  363 (365)
T ss_dssp             TCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred             CCCEECCHHHHHCCCHHHHHHHHHHC
T ss_conf             59745786787698759999999977