Query gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 357 No_of_seqs 251 out of 3008 Neff 6.5 Searched_HMMs 23785 Date Tue May 31 22:35:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780874.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1zbt_A RF-1, peptide chain rel 100.0 0 0 969.5 31.3 355 3-357 13-371 (371) 2 3d5a_X RF1, peptide chain rele 100.0 0 0 949.3 35.9 348 6-357 2-353 (354) 3 1gqe_A Release factor 2, RF2; 100.0 0 0 938.6 32.9 331 8-346 26-363 (365) 4 2b3t_B RF-1, peptide chain rel 100.0 0 0 958.1 16.2 353 1-357 1-358 (360) 5 2ihr_1 Peptide chain release f 100.0 0 0 909.3 23.7 336 8-353 18-358 (365) 6 1rq0_A RF-1, peptide chain rel 100.0 0 0 900.5 27.1 331 12-356 1-333 (342) 7 2jva_A Peptidyl-tRNA hydrolase 99.7 1.7E-17 7E-22 145.4 8.0 68 214-281 7-99 (108) 8 2jy9_A Putative tRNA hydrolase 99.7 1.9E-17 8.1E-22 144.9 7.4 68 214-281 7-99 (148) 9 1j26_A Immature colon carcinom 99.7 1.7E-16 7E-21 138.1 7.2 70 210-279 10-105 (112) 10 1gqe_A Release factor 2, RF2; 94.5 0.31 1.3E-05 28.0 10.6 60 6-66 8-84 (365) 11 3ghg_A Fibrinogen alpha chain; 91.4 0.79 3.3E-05 25.1 7.3 15 8-22 65-79 (562) 12 2ihr_1 Peptide chain release f 85.8 0.085 3.6E-06 32.1 -0.8 22 289-311 299-320 (365) 13 1m1j_B Fibrinogen beta chain; 82.0 2.7 0.00012 21.2 10.8 22 79-100 173-194 (464) 14 1deq_A Fibrinogen (alpha chain 77.7 3.7 0.00016 20.2 10.7 14 11-24 64-77 (390) 15 1m1j_A Fibrinogen alpha subuni 68.4 6 0.00025 18.7 10.6 17 7-23 65-81 (491) 16 3lss_A Seryl-tRNA synthetase; 56.1 9.8 0.00041 17.2 11.4 54 1-54 5-61 (484) 17 3ghg_B Fibrinogen beta chain; 55.2 10 0.00042 17.1 8.6 21 79-99 168-188 (461) 18 2pih_A Protein YMCA; regulate 50.6 12 0.0005 16.6 9.1 58 1-61 1-58 (151) 19 1vq8_D 50S ribosomal protein L 48.6 6.6 0.00028 18.4 1.8 72 154-229 66-138 (177) 20 2hdl_A Small inducible cytokin 48.3 12 0.00051 16.5 3.1 44 101-144 23-74 (78) 21 3ofo_I 30S ribosomal protein S 48.1 9.4 0.0004 17.3 2.5 29 192-222 4-32 (127) 22 3jyv_I 40S ribosomal protein S 46.8 9.2 0.00039 17.4 2.3 29 192-222 3-31 (138) 23 2vqe_I 30S ribosomal protein S 46.1 7.9 0.00033 17.8 1.8 28 193-222 6-33 (128) 24 1m1j_C Fibrinogen gamma chain; 43.1 15 0.00064 15.8 7.6 10 187-196 247-256 (409) 25 2xoa_A Ryanodine receptor 1; m 37.6 18 0.00077 15.2 3.1 16 238-253 340-355 (559) 26 1rpx_A Protein (ribulose-phosp 37.5 15 0.00064 15.8 2.2 58 112-174 145-212 (230) 27 2pc6_A Probable acetolactate s 36.7 19 0.00079 15.1 3.1 61 132-193 18-83 (165) 28 1tqj_A Ribulose-phosphate 3-ep 35.6 14 0.00059 16.0 1.8 38 112-149 139-176 (230) 29 2f1f_A Acetolactate synthase i 35.4 20 0.00083 15.0 3.3 62 132-194 17-83 (164) 30 3bbn_I Ribosomal protein S9; s 34.1 16 0.00066 15.7 1.8 16 193-208 74-89 (197) 31 3inp_A D-ribulose-phosphate 3- 32.8 20 0.00082 15.0 2.1 33 114-146 163-195 (246) 32 3lu0_D DNA-directed RNA polyme 32.2 22 0.00093 14.6 3.2 13 111-123 820-832 (1407) 33 1m0d_A Endonuclease, endodeoxy 31.8 14 0.00059 16.1 1.2 13 136-148 98-110 (138) 34 2zkq_i 40S ribosomal protein S 31.3 22 0.00094 14.6 2.2 29 192-222 11-39 (146) 35 1dp7_P MHC class II transcript 30.7 23 0.00098 14.5 2.6 19 129-147 19-37 (76) 36 1t9k_A Probable methylthioribo 29.4 24 0.001 14.3 5.6 125 56-186 97-239 (347) 37 2dq0_A Seryl-tRNA synthetase; 29.4 24 0.001 14.3 13.5 35 80-114 82-126 (455) 38 2jya_A AGR_C_3324P, uncharacte 28.2 13 0.00056 16.2 0.6 18 137-154 65-82 (106) 39 2waq_A DNA-directed RNA polyme 27.4 26 0.0011 14.1 3.8 37 121-157 620-656 (880) 40 3err_A Fusion protein of micro 26.5 27 0.0011 14.0 6.4 51 17-67 138-190 (536) 41 3h0g_A DNA-directed RNA polyme 23.8 30 0.0013 13.7 1.8 27 180-208 1099-1125(1752) 42 1n4k_A Inositol 1,4,5-trisphos 23.0 31 0.0013 13.5 2.5 39 103-154 29-68 (381) 43 1t9h_A YLOQ, probable GTPase E 22.3 12 0.00049 16.7 -0.6 100 98-207 107-222 (307) 44 1x9u_A Umecyanin; cupredoxin, 22.1 28 0.0012 13.9 1.4 34 135-191 20-53 (116) 45 2fgc_A Acetolactate synthase, 21.8 33 0.0014 13.3 3.0 74 111-196 33-111 (193) 46 2dq3_A Seryl-tRNA synthetase; 21.6 33 0.0014 13.3 11.8 111 3-116 1-127 (425) 47 3nvt_A 3-deoxy-D-arabino-heptu 21.4 15 0.00063 15.8 -0.1 136 4-146 25-171 (385) 48 1t9f_A Protein 1D10; structura 21.0 34 0.0014 13.2 4.9 20 239-258 127-146 (187) No 1 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Probab=100.00 E-value=0 Score=969.53 Aligned_cols=355 Identities=44% Similarity=0.712 Sum_probs=346.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 786898999999999999985385315799---99999998799999999999999998999999972037853566543 Q gi|254780874|r 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 (357) Q Consensus 3 mi~~~kL~~l~~rl~ELE~~Lsdp~~w~d~---~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elA 79 (357) |-+-+||+.+..|+.+|+.+|++|+||+|+ ++++|+++.|+++++.|+.|....+++.++.+|+.+.++|++|.+++ T Consensus 13 M~ifdkLe~i~~r~~eLe~~lsdp~~w~D~~ka~~l~kE~s~L~~~v~~~~~l~~~~~dl~el~eLl~e~~~D~el~ela 92 (371) T 1zbt_A 13 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMA 92 (371) T ss_dssp CCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 12999999999999999998709841229999999999999899999999999999987999999985136885799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC Q ss_conf 32223320005778889998640001135540378862268852178899999999999987649840013211354477 Q gi|254780874|r 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG 159 (357) Q Consensus 80 eeEl~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aG 159 (357) ++|+..+..+++.++++|+..|||+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|++|| T Consensus 93 ~eEl~~~~~~l~~l~~~le~~lL~~d~~D~~nailEIrAGaGG~EA~dwA~~L~RMY~r~Ae~~g~k~eiid~~~g~~gG 172 (371) T 1zbt_A 93 KEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGG 172 (371) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC T ss_conf 99998755458999999999851589776668699996488853799999999999999999769834761435777677 Q ss_pred CCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCC Q ss_conf 21113777503111210002465026761254567851101688885303343322245434799985288875200063 Q gi|254780874|r 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 (357) Q Consensus 160 ik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~ 239 (357) ||+|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++++++|+|+||+|||||||||||||||| T Consensus 173 iKsa~~~I~G~~ayg~Lk~E~GvHRv~Rip~~~s~~r~hts~~~v~v~p~~~~~~~~i~~~dl~idt~RssG~GGQ~VNk 252 (371) T 1zbt_A 173 LKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 252 (371) T ss_dssp EEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC---------C T ss_pred CCEEEEEEEECEEHHCCEEECEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC T ss_conf 12169999502121021340514799997887888870688789998056776544057775069983388887777776 Q ss_pred CCCEEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEE Q ss_conf 2121588964984488-843654135899999999999999999999999987446522467423822104489981124 Q gi|254780874|r 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITD 318 (357) Q Consensus 240 t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~D 318 (357) |+|||||||+||||+| ||+|||||+||++||++|++|||+++.+++.++..+.||+|||+|+||+|||||||||+|||| T Consensus 253 t~sAVRitH~pTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~rk~~~~~~~rs~~IRtY~~p~~~V~D 332 (371) T 1zbt_A 253 VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTD 332 (371) T ss_dssp CCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTTTEEEE T ss_pred CCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 55158999934885899426514387999999999999999999999999999887304026643575081079775066 Q ss_pred EECCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 321644178778728866999999999999999874059 Q gi|254780874|r 319 HRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 (357) Q Consensus 319 hR~~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e 357 (357) ||||++++|+++||||+||+||++|+.|+.+++|+++++ T Consensus 333 hR~~~~~~~~~~vldG~ld~~i~a~~~~~~~~~l~~~~~ 371 (371) T 1zbt_A 333 HRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELNK 371 (371) T ss_dssp TTTTEEESCHHHHHTTCCHHHHHHHHHHHHHHHHHHCC- T ss_pred HCCCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 324886368357619866999999999999999996069 No 2 >3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Probab=100.00 E-value=0 Score=949.28 Aligned_cols=348 Identities=45% Similarity=0.718 Sum_probs=338.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 89899999999999998538531579---999999998799999999999999998999999972037853566543322 Q gi|254780874|r 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 (357) Q Consensus 6 ~~kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeE 82 (357) -+||+.+..|+.+|+.+|++|+||+| +++++|+++.|+++++.++.|.+...++.++.+|+ +|+++.+++++| T Consensus 2 ~dKLe~i~~r~~eLe~~l~dp~~w~D~~ka~~l~ke~~~L~~~v~~~~~l~~~~~dl~el~el~----~D~e~~ela~ee 77 (354) T 3d5a_X 2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL----DDPELKEMAKAE 77 (354) T ss_dssp HHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----TCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHH T ss_conf 1579999999999999861983223999999999999999999999999999999899999885----281107899999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCE Q ss_conf 23320005778889998640001135540378862268852178899999999999987649840013211354477211 Q gi|254780874|r 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 (357) Q Consensus 83 l~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~ 162 (357) +..+...++.++++|+..+||+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+ T Consensus 78 ~~~l~~~l~~l~~ele~~lL~~~~~D~~nailEIrAGaGG~EA~dwA~~L~RMY~r~ae~~g~k~evi~~~~~~~~Gik~ 157 (354) T 3d5a_X 78 REALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSK 157 (354) T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCE T ss_conf 99998778889999999717798655547179985167872499999999999999997475047861246655677505 Q ss_pred EEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 13777503111210002465026761254567851101688885303343322245434799985288875200063212 Q gi|254780874|r 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 (357) Q Consensus 163 v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~s 242 (357) |+|.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|+++++++.|+++||+|||||||||||||||||+| T Consensus 158 ~~~~i~G~~ayg~Lk~E~GvHRv~Rip~~e~~~r~hTs~a~V~v~p~~~~~~~~i~~~dl~i~t~RssG~GGQ~VNkt~s 237 (354) T 3d5a_X 158 VVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDS 237 (354) T ss_dssp EEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCC T ss_pred EEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCC T ss_conf 99999826630011440574268856988778855778889999455555545667103225643457887666565454 Q ss_pred EEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEC Q ss_conf 1588964984488-843654135899999999999999999999999987446522467423822104489981124321 Q gi|254780874|r 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI 321 (357) Q Consensus 243 avri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~ 321 (357) ||||||+||||+| ||+|||||+||++||++|++|||+++.+++.++.++.|++|||+|+||+|||||||||+||||||| T Consensus 238 AVRitH~ptGi~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~rV~DhR~ 317 (354) T 3d5a_X 238 AVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRI 317 (354) T ss_dssp EEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETTT T ss_pred EEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCC T ss_conf 47999706766887133022899999999999999999999999999998887337244667884670069875133044 Q ss_pred CCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 644178778728866999999999999999874059 Q gi|254780874|r 322 NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 (357) Q Consensus 322 ~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e 357 (357) |++++|+++||+|+||+||++|+.|+++++|+++.| T Consensus 318 ~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~l~~~~e 353 (354) T 3d5a_X 318 GFTTHDLEGVLSGHLTPILEALKRADQERQLAALAE 353 (354) T ss_dssp TEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHHSC T ss_pred CCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 886368057758873999999999999999997518 No 3 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Probab=100.00 E-value=0 Score=938.62 Aligned_cols=331 Identities=34% Similarity=0.548 Sum_probs=307.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 899999999999998538531579---99999999879999999999999999899999997203785356654332223 Q gi|254780874|r 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 (357) Q Consensus 8 kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~ 84 (357) .++.++.|+.+|+.+|++|+||+| +++++|+++.|+++++.|+.|.+...++.++.+|+.++ +|+++.+++..++. T Consensus 26 d~d~~~~rl~eLe~~l~~p~~w~D~~~a~kl~ke~~~L~~~v~~~~~l~~~~~dl~el~el~~ee-~d~e~~~e~~~el~ 104 (365) T 1gqe_A 26 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA-DDEETFNEAVAELD 104 (365) T ss_dssp THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH T ss_conf 98999999999999864972554999999999999999999999999999999899999887601-32788999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEE Q ss_conf 32000577888999864000113554037886226885217889999999999998764984001321135447721113 Q gi|254780874|r 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 (357) Q Consensus 85 ~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~ 164 (357) .+...++. |+..++|+||+|.+||||||||||||+||||||+||||||+|||+++||+++++++++|+.||||+|+ T Consensus 105 ~l~~~l~~----le~~ll~~d~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~ryAE~kgwk~evid~~~~e~gGik~v~ 180 (365) T 1gqe_A 105 ALEEKLAQ----LEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT 180 (365) T ss_dssp HHHHHHHH----HGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE T ss_pred HHHHHHHH----HHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEE T ss_conf 99999999----87513689966555745999847996899999999999999999985992589861677767327999 Q ss_pred EEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE Q ss_conf 7775031112100024650267612545678511016888853033-433222454347999852888752000632121 Q gi|254780874|r 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 (357) Q Consensus 165 ~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~sa 243 (357) |.|+|+||||+||+|+||||||||||||++||||||||||+|+|++ ++++++|+|+||||||||||||||||||||+|| T Consensus 181 ~~I~G~~aYg~Lk~EsGVHRvqRvp~tes~gR~HTS~asV~V~P~~~~~~~i~i~~~Dl~id~~rssG~GGQ~vNkt~sa 260 (365) T 1gqe_A 181 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 260 (365) T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE T ss_pred EEEECCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCEECCHHHEEEEEEECCCCCCCCCCCCCCE T ss_conf 99974672566631487303675688688884798667899825788764043165782798655688876765653434 Q ss_pred EEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCEEECCCCCCCEEEEE Q ss_conf 588964984488-84365413589999999999999999999999998744--652246742382210448998112432 Q gi|254780874|r 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHR 320 (357) Q Consensus 244 vri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r--~~~~g~~~rs~~iRtY~~~~~rv~DhR 320 (357) |||||+||||+| ||+|||||+||++||++|++|||+++.+++.++....| +.++| ||+|||||||||||||||| T Consensus 261 Vri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~IRtYnf~~~rVtDhR 337 (365) T 1gqe_A 261 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG---WGSQIRSYVLDDSRIKDLR 337 (365) T ss_dssp EEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCC---SCSEEEEEEGGGTEEEETT T ss_pred EEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCEECC T ss_conf 8999707864999606020477899999999999999999999999999884311355---7698567548998140306 Q ss_pred CCCEECCHHHHHCCCHHHHHHHHHHH Q ss_conf 16441787787288669999999999 Q gi|254780874|r 321 INLTLYKLEYVLQGYIDDIINPLLTA 346 (357) Q Consensus 321 ~~~~~~~~~~~l~G~l~~~i~~~~~~ 346 (357) ||++++|+++||+|+||+||++|+.+ T Consensus 338 ~~~~~~~~~~vl~G~ld~~i~a~l~~ 363 (365) T 1gqe_A 338 TGVETRNTQAVLDGSLDQFIEASLKA 363 (365) T ss_dssp TCCEESCHHHHHTTCCHHHHHHHHHT T ss_pred CCCEECCHHHHHCCCHHHHHHHHHHC T ss_conf 59745786787698759999999977 No 4 >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Probab=100.00 E-value=0 Score=958.10 Aligned_cols=353 Identities=49% Similarity=0.817 Sum_probs=339.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 9678689899999999999998538531579---9999999987999999999999999989999999720378535665 Q gi|254780874|r 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 (357) Q Consensus 1 m~mi~~~kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~e 77 (357) |.-...+||+.+..|+++|+.+|++|++|+| +++++|+++.|+++++.++.|.....++.++.+|+. |+++.+ T Consensus 1 M~~sl~~kLe~i~~r~~eLe~~lsdp~~w~D~~~a~~l~kE~~~L~~~v~~~~~~~~~~~~l~el~el~~----d~e~~e 76 (360) T 2b3t_B 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD----DPEMRE 76 (360) T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC--------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH T ss_conf 9778999999999999999998719862009999999999999999999999999999998999998744----840189 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC Q ss_conf 43322233200057788899986400011355403788622688521788999999999999876498400132113544 Q gi|254780874|r 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 (357) Q Consensus 78 lAeeEl~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~ 157 (357) ++++|+..+..+++.++++++.+|+|+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+. T Consensus 77 la~ee~~~~~~~l~~l~~~l~~~Ll~~~~~D~~nailEIraGaGG~EA~~fA~~L~rMY~r~ae~~gwk~eii~~~~~e~ 156 (360) T 2b3t_B 77 MAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEH 156 (360) T ss_dssp ------------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 99999999999999999999997079995645584999925888467999999999999999976588527844215677 Q ss_pred CCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEEEEECCCCCCCCC Q ss_conf 7721113777503111210002465026761254567851101688885303343-322245434799985288875200 Q gi|254780874|r 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 (357) Q Consensus 158 aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~rssG~GGQ~ 236 (357) ||||+|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ ++++|||+||+||||||||||||| T Consensus 157 ~G~k~~~~~I~G~~ayg~Lk~EsGVHRvqRvp~~~~~~r~hTs~~~v~v~p~~~~~~~~~i~~~dl~i~t~RssG~GGQ~ 236 (360) T 2b3t_B 157 GGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQH 236 (360) T ss_dssp SSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTT T ss_pred CCEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCC T ss_conf 86258999997576124554347862699747888888267777799995577753001427111569987779999877 Q ss_pred CCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC Q ss_conf 0632121588964984488-843654135899999999999999999999999987446522467423822104489981 Q gi|254780874|r 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 (357) Q Consensus 237 vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~r 315 (357) ||||+|||||||+||||+| ||+|||||+||++||++||+|||+.+.+++.++..+.||+|||||+||+|||||||||+| T Consensus 237 VNkt~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~rk~~vg~~~rse~IRtYn~p~~~ 316 (360) T 2b3t_B 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGR 316 (360) T ss_dssp CCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTTTE T ss_pred CCCHHHCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC T ss_conf 66131212789658876999727024799999999999999999999999999999876004001233752745179776 Q ss_pred EEEEECCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 124321644178778728866999999999999999874059 Q gi|254780874|r 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 (357) Q Consensus 316 v~DhR~~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e 357 (357) |||||||++++|+++||+|+||+||++|+.|+++++|++++| T Consensus 317 V~DhR~~~~~~~~~~vl~G~ld~~i~a~~~~~~~~~l~~~~~ 358 (360) T 2b3t_B 317 VTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 (360) T ss_dssp EEEGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHCC---- T ss_pred CHHHCCCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 443145887778357649872999999999999999987555 No 5 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Probab=100.00 E-value=0 Score=909.30 Aligned_cols=336 Identities=34% Similarity=0.499 Sum_probs=306.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 89999999999999853853157999---999999879999999999999999899999997203785356654332223 Q gi|254780874|r 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 (357) Q Consensus 8 kL~~l~~rl~ELE~~Lsdp~~w~d~~---klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~ 84 (357) .++.++.|+.+|+.+|++|+||+|+. +++|+++.|+++++.|+.+. +++.++.+|+.+ .|+++.++++.|+. T Consensus 18 Dle~~~~rl~ELE~~lsdP~fW~D~~kA~kl~KE~s~L~~iV~~~~~l~---~~ledl~EL~ee--~d~E~~e~~~~El~ 92 (365) T 2ihr_1 18 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLE---SDLQGLLELMEE--LPAEEREALKPELE 92 (365) T ss_dssp SHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHH---HHTTTHHHHTTC--SCCTTGGGTGGGTH T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHH T ss_conf 9999999999999987198044499999999999999999999999999---999999999863--01536889987443 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEE Q ss_conf 32000577888999864000113554037886226885217889999999999998764984001321135447721113 Q gi|254780874|r 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 (357) Q Consensus 85 ~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~ 164 (357) .+.+.++.++ ..++|+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|++||||+|+ T Consensus 93 ~l~~~l~~le----~~~ll~~~~D~~nailEIrAGaGG~EA~dwA~~L~RMY~r~Ae~~g~k~eii~~~~~e~~Gik~~~ 168 (365) T 2ihr_1 93 EAAKKLDELY----HQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQ 168 (365) T ss_dssp HHHHHHHHHH----HHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEE T ss_pred HHHHHHHHHH----HHHHCCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEE T ss_conf 4555799999----987146833125413288626860689999999999999999767984899874045688860699 Q ss_pred EEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE Q ss_conf 7775031112100024650267612545678511016888853033-433222454347999852888752000632121 Q gi|254780874|r 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 (357) Q Consensus 165 ~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~sa 243 (357) +.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++ +++++.|+|+||+|||||||||||||||||+|| T Consensus 169 ~~I~G~~ayg~lk~E~GvHRv~Rv~~~~~~~r~hts~~~v~v~P~~~~~~~~~i~~~dl~i~t~rssG~GGQ~vNkt~sA 248 (365) T 2ihr_1 169 ILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSA 248 (365) T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSE T ss_pred EEEECCCHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCE T ss_conf 99965653320332163288986389789997244467899976776113200330111589886688987886651324 Q ss_pred EEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECC Q ss_conf 588964984488-8436541358999999999999999999999999874465224674238221044899811243216 Q gi|254780874|r 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 (357) Q Consensus 244 vri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~ 322 (357) |||||+||||+| ||+|||||+||++||++|++|||+++.++++++..+.| +|+|+++||+|||||||||+|||||||| T Consensus 249 Vri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~~-~~~~~~~r~~~iRtY~fp~~rVtDhR~~ 327 (365) T 2ihr_1 249 VRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR-GEVRPIEWGSQIRSYVLDKNYVKDHRTG 327 (365) T ss_dssp EEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CCSCCSCCCSCSEEEEGGGTEEEETTTC T ss_pred EEEEECCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCEECCCCCCCCCCCC T ss_conf 799973872255430121477659999999999999999999999999988-4747777658811525898834201649 Q ss_pred CEECCHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 4417877872886699999999999999987 Q gi|254780874|r 323 LTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 (357) Q Consensus 323 ~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~ 353 (357) ++++|+++||+|+||+||++++.|..+++.. T Consensus 328 ~~~~~~~~vl~G~ld~~i~a~l~~~~~~~~~ 358 (365) T 2ihr_1 328 LMRHDPENVLDGDLMDLIWAGLEWKAGRRQG 358 (365) T ss_dssp CEESCHHHHTTTCCHHHHHHHHHHHHTTC-- T ss_pred CEECCHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 8557868876887099999999999999873 No 6 >1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Probab=100.00 E-value=0 Score=900.54 Aligned_cols=331 Identities=46% Similarity=0.737 Sum_probs=303.7 Q ss_pred HHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998538531579-99999999879999999999999999899999997203785356654332223320005 Q gi|254780874|r 12 LKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEI 90 (357) Q Consensus 12 l~~rl~ELE~~Lsdp~~w~d-~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~~l~~~l 90 (357) |+.|+.+|+.+|++|++|+| ++++++++++|+++++.++.+. ++.++.+++.+. .|.+ .|+..+..++ T Consensus 1 L~er~~ELe~~ls~P~~~~d~~~~l~ke~~~L~~i~~l~~~l~----d~~el~el~~ee-~d~e------~el~~l~~~l 69 (342) T 1rq0_A 1 MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLREE-GENE------LEIEKYEKEL 69 (342) T ss_dssp CTTTTTHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTTT-TTCC------SCHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCC-CCCH------HHHHHHHHHH T ss_conf 9689999999971899899999999999999999999999999----899999997458-9858------9999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECC Q ss_conf 77888999864000113554037886226885217889999999999998764984001321135447721113777503 Q gi|254780874|r 91 RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 (357) Q Consensus 91 ~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~ 170 (357) +.++.+|.++ .+|+|++||||||||||||+||||||+||||||+|||+++||+++++++++|+.||||+|++.|+|+ T Consensus 70 ~~l~~el~~l---l~p~D~~nailEIrAGaGG~EA~~fA~~L~RMY~r~Ae~kgwk~eil~~~~~~~gGik~~~~~I~G~ 146 (342) T 1rq0_A 70 DQLYQELLFL---LSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGK 146 (342) T ss_dssp HHHHHHHHHH---HSCSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEEST T ss_pred HHHHHHHHHH---CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECC T ss_conf 9999998740---7877778869999679985379999999999999997651335422333544456764136998341 Q ss_pred CHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC Q ss_conf 11121000246502676125456785110168888530334332224543479998528887520006321215889649 Q gi|254780874|r 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 (357) Q Consensus 171 ~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~p 250 (357) +|||+||+|+|||||||||||+++||||||||+|+|+|+.++++|+|+|+||+|||||||||||||||||+|||||||+| T Consensus 147 ~ayg~Lk~E~GvHRvqRvp~~es~gr~hTS~a~V~v~p~~~~~~i~i~~~dl~i~t~RssG~GGQ~VNkt~saVRitH~P 226 (342) T 1rq0_A 147 NAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLP 226 (342) T ss_dssp THHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETT T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCEEECHHHEEEEEECCCCCCCCCCCCCCEEEEEEECC T ss_conf 26653101065589997179888887576777999946677665365522402541037874324466666069999748 Q ss_pred CCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEECCHH Q ss_conf 84488-84365413589999999999999999999999998744652246742382210448998112432164417877 Q gi|254780874|r 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 (357) Q Consensus 251 tgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~~~~~ 329 (357) |||+| ||+|||||+||++||++|++|||+.+.+++.++....|++|||+|+||+|||||||||+||||||||++++|++ T Consensus 227 TGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~ig~~~rs~~iRtY~fp~~rV~DhR~~~~~~~l~ 306 (342) T 1rq0_A 227 TGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQ 306 (342) T ss_dssp TCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTTTEEEETTTTEEESCHH T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCHH T ss_conf 86388734602389999999999999999999999999999987636002356788626318988743312598107867 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 872886699999999999999987405 Q gi|254780874|r 330 YVLQGYIDDIINPLLTAHQAKMIGSAS 356 (357) Q Consensus 330 ~~l~G~l~~~i~~~~~~~~~~~l~~~~ 356 (357) +||+|+||+||++|+.++..++|.++. T Consensus 307 ~vl~G~ld~~i~~~~~~~~~~~l~~~~ 333 (342) T 1rq0_A 307 EILDGDLDEIISKLIEHDIENNLEEVL 333 (342) T ss_dssp HHHTTCCHHHHHHHHHHHHTTTHHHHC T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 875987399999999999999999986 No 7 >2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae PV} Probab=99.71 E-value=1.7e-17 Score=145.38 Aligned_cols=68 Identities=29% Similarity=0.486 Sum_probs=61.4 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCC------------------------EEEEE-CCCCCHHHHHH Q ss_conf 222454347999852888752000632121588964984------------------------48884-36541358999 Q gi|254780874|r 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG------------------------IMVTS-SEKSQHQNRLR 268 (357) Q Consensus 214 ~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~ptg------------------------i~v~~-~eRsQ~~Nk~~ 268 (357) .+.|+++||++.+.|||||||||||||+|+|.|++-|++ |+|.| ..|||++||+. T Consensus 7 ~i~Ip~~el~~~f~RSSGPGGQ~VNK~~TkV~L~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RSQ~~Nr~~ 86 (108) T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108) T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH T ss_pred CCEECHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH T ss_conf 75098799389999878998765123252257897676555556899999997417305797099998874799999999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780874|r 269 AMKVLRARLYDVE 281 (357) Q Consensus 269 A~~~L~~~l~~~~ 281 (357) |++.|...|.+.. T Consensus 87 a~~kL~~li~~a~ 99 (108) T 2jva_A 87 ALLRLSELIVNAA 99 (108) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 8 >2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=99.70 E-value=1.9e-17 Score=144.92 Aligned_cols=68 Identities=35% Similarity=0.559 Sum_probs=59.0 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEE------ECCC---------------C---EEEEEC-CCCCHHHHHH Q ss_conf 2224543479998528887520006321215889------6498---------------4---488843-6541358999 Q gi|254780874|r 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT------HIPT---------------G---IMVTSS-EKSQHQNRLR 268 (357) Q Consensus 214 ~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~------H~pt---------------g---i~v~~~-eRsQ~~Nk~~ 268 (357) .|.|+++||+|.|.|||||||||||||+|+|.|. ++|. + |+|.|+ .|||++|++. T Consensus 7 ~i~Ip~~ei~~~f~RSsGPGGQnVNK~~TkV~Lr~~l~~~~l~~~~~~rl~~~~~~ri~~~g~lvI~sq~~RSQ~~Nr~~ 86 (148) T 2jy9_A 7 TVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIRASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFRSQELNREA 86 (148) T ss_dssp SCCBCSTTCEEEEECCSCCCSSCSCSCSCEEEEEECSTTSCCCHHHHHHHHHSCCTTBCSSSCEEEEECSSSCHHHHHHH T ss_pred CCCCCHHHEEEEEEECCCCCCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH T ss_conf 77178799078888768998763115533312473145567998999999997366656895089997785899999999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780874|r 269 AMKVLRARLYDVE 281 (357) Q Consensus 269 A~~~L~~~l~~~~ 281 (357) |+..|.+.|.+.. T Consensus 87 Al~kL~~~I~~a~ 99 (148) T 2jy9_A 87 AIARLVAVIKELT 99 (148) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999864 No 9 >1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.4.1 Probab=99.65 E-value=1.7e-16 Score=138.14 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=60.8 Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCC-------------------------CEEEEE-CCCCCH Q ss_conf 343322245434799985288875200063212158896498-------------------------448884-365413 Q gi|254780874|r 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT-------------------------GIMVTS-SEKSQH 263 (357) Q Consensus 210 ~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~pt-------------------------gi~v~~-~eRsQ~ 263 (357) .......|+.++|++.+.|||||||||||||+|+|.|++.+. +|+|.| ..|||+ T Consensus 10 ~~~~~~~Ip~~~i~~~f~RSsGPGGQ~VNK~~TkV~L~~~l~~~~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~ 89 (112) T 1j26_A 10 AKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQF 89 (112) T ss_dssp CCSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHH T ss_pred HHHHCCCCCHHHEEEEEEECCCCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH T ss_conf 33404704878937998876799998444303030589762323579999999999986373666983999988767999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5899999999999999 Q gi|254780874|r 264 QNRLRAMKVLRARLYD 279 (357) Q Consensus 264 ~Nk~~A~~~L~~~l~~ 279 (357) +||+.|+..|...|.+ T Consensus 90 ~Nr~~a~~kL~~li~~ 105 (112) T 1j26_A 90 RNLAECLQKIRDMIAE 105 (112) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 10 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Probab=94.48 E-value=0.31 Score=27.99 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 898999999999999985385315-7999999----------------999879999999999999999899999997 Q gi|254780874|r 6 HKQICDLKNRFAEIELRMSESPSV-DAYIKLT----------------EEYAAISPIISKISIYDQKKQEEQDLHTVI 66 (357) Q Consensus 6 ~~kL~~l~~rl~ELE~~Lsdp~~w-~d~~kls----------------Ke~s~L~~iv~~~~~~~~~~~ei~el~eLl 66 (357) ..+|+++..++..|...+. .+.. ..+..+. +..++++.+...++.|..+...+.++.++. T Consensus 8 ~~~i~~l~~~~~~l~~~ld-~d~~~~rl~eLe~~l~~p~~w~D~~~a~kl~ke~~~L~~~v~~~~~l~~~~~dl~el~ 84 (365) T 1gqe_A 8 NNRIQDLTERSDVLRGYLD-YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLL 84 (365) T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999987679-8999999999999864972554999999999999999999999999999999899999 No 11 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=91.44 E-value=0.79 Score=25.07 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 899999999999998 Q gi|254780874|r 8 QICDLKNRFAEIELR 22 (357) Q Consensus 8 kL~~l~~rl~ELE~~ 22 (357) +|++|+.++.++.+. T Consensus 65 ~i~~l~~~~~~~~~~ 79 (562) T 3ghg_A 65 RINKLKNSLFEYQKN 79 (562) T ss_dssp HHHHHHHHHTHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999988 No 12 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Probab=85.81 E-value=0.085 Score=32.05 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=8.6 Q ss_pred HHHHHHHHCCCCCCCCCEEECCC Q ss_conf 98744652246742382210448 Q gi|254780874|r 289 RSANRKLQIGSGDRSERIRTYNF 311 (357) Q Consensus 289 ~~~~r~~~~g~~~rs~~iRtY~~ 311 (357) +.+.....+|+--|+.-. .|+. T Consensus 299 ~~~~~~~~r~~~iRtY~f-p~~r 320 (365) T 2ihr_1 299 RGEVRPIEWGSQIRSYVL-DKNY 320 (365) T ss_dssp TCCSCCSCCCSCSEEEEG-GGTE T ss_pred HHCCCCCCCCCCCCCEEC-CCCC T ss_conf 847477776588115258-9883 No 13 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Probab=82.02 E-value=2.7 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3322233200057788899986 Q gi|254780874|r 79 AQIEVLAIEKEIRELENEINYL 100 (357) Q Consensus 79 AeeEl~~l~~~l~~le~eL~~~ 100 (357) .+..+..+..++..++.++..+ T Consensus 173 Lq~~l~elq~kIq~LE~qI~q~ 194 (464) T 1m1j_B 173 LRAVIDSLHKKIQKLENAIATQ 194 (464) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999878 No 14 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Probab=77.72 E-value=3.7 Score=20.23 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=5.6 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999999999853 Q gi|254780874|r 11 DLKNRFAEIELRMS 24 (357) Q Consensus 11 ~l~~rl~ELE~~Ls 24 (357) ++..++++|..++. T Consensus 64 ~~~~~i~~l~~~l~ 77 (390) T 1deq_A 64 DFTSRINKLRDSLF 77 (390) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 15 >1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A Probab=68.44 E-value=6 Score=18.71 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 98999999999999985 Q gi|254780874|r 7 KQICDLKNRFAEIELRM 23 (357) Q Consensus 7 ~kL~~l~~rl~ELE~~L 23 (357) .+|++|..++.+++... T Consensus 65 ~ri~~Lq~~L~e~q~~~ 81 (491) T 1m1j_A 65 QRIDNIRQQLADSQNKY 81 (491) T ss_dssp HHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 16 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=56.06 E-value=9.8 Score=17.19 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=28.6 Q ss_pred CCCCCHHHHHHHH--HHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9678689899999--999-99999853853157999999999879999999999999 Q gi|254780874|r 1 MVFLSHKQICDLK--NRF-AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ 54 (357) Q Consensus 1 m~mi~~~kL~~l~--~rl-~ELE~~Lsdp~~w~d~~klsKe~s~L~~iv~~~~~~~~ 54 (357) |+|+..+.|-+-. ..+ +.+...-.+++..+...++-++.+++..-++.+..-.+ T Consensus 5 ~~MLDikliRe~~n~d~vre~lkkR~~d~dlVD~il~lD~~rR~l~~e~e~Lr~erN 61 (484) T 3lss_A 5 MMVLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLIN 61 (484) T ss_dssp CCCCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 000118998658986999999987499878999999999999999999999999986 No 17 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Probab=55.20 E-value=10 Score=17.09 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 332223320005778889998 Q gi|254780874|r 79 AQIEVLAIEKEIRELENEINY 99 (357) Q Consensus 79 AeeEl~~l~~~l~~le~eL~~ 99 (357) .+..+..+..++..|+.++.. T Consensus 168 LQ~~i~~l~~kIq~Leq~Isq 188 (461) T 3ghg_B 168 LRSILENLRSKIQKLESDVSA 188 (461) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999988 No 18 >2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1 Probab=50.59 E-value=12 Score=16.59 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=35.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9678689899999999999998538531579999999998799999999999999998999 Q gi|254780874|r 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 (357) Q Consensus 1 m~mi~~~kL~~l~~rl~ELE~~Lsdp~~w~d~~klsKe~s~L~~iv~~~~~~~~~~~ei~e 61 (357) |.|.+.+ +|...-.+|...+.+.+-..+++++.+.+..-..+.+.+..|.....++.. T Consensus 1 ~~~~t~e---dI~d~A~eL~~~I~~seey~~y~~A~~~i~~d~eaq~li~eF~~~q~e~~~ 58 (151) T 2pih_A 1 MTLYSKK---DIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVN 58 (151) T ss_dssp -CCBCHH---HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 9855399---999999999999872999999999999998199999999999999999999 No 19 >1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Probab=48.64 E-value=6.6 Score=18.40 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=44.4 Q ss_pred CCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCC-CCCCCCCCCEEEEEEECC Q ss_conf 3544772111377750311121000246502676125456785110168888530334-332224543479998528 Q gi|254780874|r 154 DNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRA 229 (357) Q Consensus 154 ~ge~aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~-~~~~~i~~~dl~i~~~rs 229 (357) +|+--|+| +.+.|+.+|.+|.-=-.+- .-++..||.+|-..-.--...++|+++ |..+.|.-=|+-|.|-|. T Consensus 66 kG~pIG~k---VTLRg~~m~~FL~kll~~v-~~~~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~GmdIti~t~~~ 138 (177) T 1vq8_D 66 EGDPIGAK---VTLRDEMAEEFLQTALPLA-ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRP 138 (177) T ss_dssp SSSEEEEE---EEECTHHHHHHHHHHGGGS-CCCGGGBCSSSCEEEC--------------------CEEEEEEECG T ss_pred CCCEEEEE---EEEEHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCEEEEEEECCC T ss_conf 79825899---9973888999999985224-8885454898648878278833664420466772011799995889 No 20 >2hdl_A Small inducible cytokine B14; CXCL14, BRAK, chemokine; NMR {Homo sapiens} Probab=48.34 E-value=12 Score=16.51 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=33.8 Q ss_pred HCCCCCC-CCCCEEEEEECCCC--CCHH-----HHHHHHHHHHHHHHHHHCC Q ss_conf 4000113-55403788622688--5217-----8899999999999987649 Q gi|254780874|r 101 LLPKDTD-DDKSCILEIRAGTG--GSEA-----ALFVGDLFRMYERYAALRK 144 (357) Q Consensus 101 LLpsde~-D~~nailEI~aGaG--G~EA-----~dwA~~L~rMY~r~ae~~g 144 (357) .+|++++ +....|++..-|++ |.+- +-|+.-|+.+|..|-+++. T Consensus 23 v~p~gp~C~~~EII~TLKn~~~~~G~~vCLdP~a~~vkklik~~~~~~~k~r 74 (78) T 2hdl_A 23 MKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRR 74 (78) T ss_dssp ECCSSTTSSSCCEEEEECSSSTTTTSEEEECTTSHHHHHHHHHHHHHHHHHT T ss_pred EECCCCCCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCC T ss_conf 9889998998589999603766778778768897799999999999876145 No 21 >3ofo_I 30S ribosomal protein S9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_I* 3iy8_I 2wwl_I 3ofp_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I 2qbf_I 2qbh_I* 2qbj_I* 2qou_I* 2qow_I* ... Probab=48.06 E-value=9.4 Score=17.29 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=19.1 Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEE Q ss_conf 5678511016888853033433222454347 Q gi|254780874|r 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 (357) Q Consensus 192 es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl 222 (357) =+-|||.||+|.|.+.|-.- .|.||..++ T Consensus 4 y~~GrRKtaiArv~l~~G~G--~i~IN~~~~ 32 (127) T 3ofo_I 4 YGTGRRKSSAARVFIKPGNG--KIVINQRSL 32 (127) T ss_dssp CCCCBCSSCEEEEEEESCCS--CBCTTSSCT T ss_pred CCCCCCCCEEEEEEEEECCE--EEEECCEEH T ss_conf 02060634899999993733--899998408 No 22 >3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I Probab=46.84 E-value=9.2 Score=17.37 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=21.0 Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEE Q ss_conf 5678511016888853033433222454347 Q gi|254780874|r 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 (357) Q Consensus 192 es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl 222 (357) .+.|||.||+|-|.+.|- .-.|.||..++ T Consensus 3 ~~~GrRKta~A~v~l~~G--~G~i~INg~~~ 31 (138) T 3jyv_I 3 QTFGKKKSATAVAHVKAG--KGLIKVNGSPI 31 (138) T ss_dssp CCCCCSSSCEEEEEEEES--CCCEEETTEEH T ss_pred EEECCCCCEEEEEEEECC--CCEEEECCCCH T ss_conf 417648318999999828--55699999115 No 23 >2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Probab=46.14 E-value=7.9 Score=17.84 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=18.2 Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCEE Q ss_conf 678511016888853033433222454347 Q gi|254780874|r 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 (357) Q Consensus 193 s~gR~hTS~a~V~V~P~~~~~~~~i~~~dl 222 (357) +-|||.||+|.|.+.|=. -.|.||..++ T Consensus 6 ~~GrRKta~Arv~l~~G~--G~I~INg~~~ 33 (128) T 2vqe_I 6 GTGRRKEAVARVFLRPGN--GKVTVNGQDF 33 (128) T ss_dssp ECCEETTEEEEEEEEESS--CCEEESSSBH T ss_pred EECCCCCEEEEEEEECCE--EEEEECCEEH T ss_conf 857460389999998581--5799999869 No 24 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=43.10 E-value=15 Score=15.80 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=4.0 Q ss_pred EECCCCCCCC Q ss_conf 6125456785 Q gi|254780874|r 187 RVPATEASGR 196 (357) Q Consensus 187 Rip~~es~gR 196 (357) ||--.+-.|. T Consensus 247 ~i~l~d~~g~ 256 (409) T 1m1j_C 247 RIELEDWSGK 256 (409) T ss_dssp EEEEECTTSC T ss_pred EEEEECCCCC T ss_conf 9999836898 No 25 >2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Probab=37.57 E-value=18 Score=15.22 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=7.2 Q ss_pred CCCCCEEEEEECCCCE Q ss_conf 6321215889649844 Q gi|254780874|r 238 NTTDSAVRITHIPTGI 253 (357) Q Consensus 238 N~t~savri~H~ptgi 253 (357) ..-+|=|||.|..||. T Consensus 340 ~~~dSy~~iqH~~t~~ 355 (559) T 2xoa_A 340 KYGESLCFVQHVASGL 355 (559) T ss_dssp BTTTCCBEEEETTTCC T ss_pred ECCCCEEEEEEEECCC T ss_conf 1167579999960383 No 26 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Probab=37.52 E-value=15 Score=15.79 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=36.3 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCE----------EEEEEECCCHHH Q ss_conf 378862268852178899999999999987649840013211354477211----------137775031112 Q gi|254780874|r 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE----------IVATISGRGVFS 174 (357) Q Consensus 112 ailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~----------v~~~I~G~~aYg 174 (357) .+|.|.||.||..=..-+-.-.+-..+|...+++.+.|. =.||++. |-.-|.|.+.|+ T Consensus 145 lvMtV~PGf~GQ~f~~~~l~kI~~~~~~~~~~~~~~~I~-----VDGGIn~~~i~~l~~~Gad~~V~GS~if~ 212 (230) T 1rpx_A 145 LIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIE-----VDGGVGPKNAYKVIEAGANALVAGSAVFG 212 (230) T ss_dssp EEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEE-----EESSCCTTTHHHHHHHTCCEEEESHHHHT T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-----EECCCCHHHHHHHHHCCCCEEEECHHHHC T ss_conf 998876898754446889999999999998659935899-----98887889999999869999997868868 No 27 >2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Probab=36.72 E-value=19 Score=15.13 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCC-----HHHHHHCCCCCEEEEEECCCCC Q ss_conf 9999999987649840013211354477211137775031-----1121000246502676125456 Q gi|254780874|r 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFESGVHRVQRVPATEA 193 (357) Q Consensus 132 L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~-----aYg~Lk~E~GvHRvqRip~~es 193 (357) |.|.=- -..++||.++-+...|++..|+...|+.+.|+. +-..|.-=--||.|+.+.+.+. T Consensus 18 L~rv~g-lFsrRg~NIeSL~v~~te~~~iSR~Tiv~~g~~~~i~qi~kQL~KLidV~~V~dlt~~~~ 83 (165) T 2pc6_A 18 LSRVAG-LFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGY 83 (165) T ss_dssp HHHHHH-HHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGSCE T ss_pred HHHHHH-HHHHCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 999999-986267435788873247998079999997788999999999967846799994588540 No 28 >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Probab=35.61 E-value=14 Score=16.05 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=25.1 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 37886226885217889999999999998764984001 Q gi|254780874|r 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 (357) Q Consensus 112 ailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~ei 149 (357) -+|.|.||.||..-..-+-.-.+--.++...+++++.| T Consensus 139 liM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I 176 (230) T 1tqj_A 139 LIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWI 176 (230) T ss_dssp EEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEE T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 99985478787655602689999999997235997069 No 29 >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Probab=35.43 E-value=20 Score=14.99 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=47.8 Q ss_pred HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCC-----HHHHHHCCCCCEEEEEECCCCCC Q ss_conf 9999999987649840013211354477211137775031-----11210002465026761254567 Q gi|254780874|r 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFESGVHRVQRVPATEAS 194 (357) Q Consensus 132 L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~-----aYg~Lk~E~GvHRvqRip~~es~ 194 (357) |.|.=-- ..++||.++-+...|++..|+...|+-+.|+. +-..|.-=--||.|+.+.+.+.- T Consensus 17 L~Rv~gl-FsrRg~NI~SL~v~~te~~~~SR~Tiv~~g~~~~i~qi~kQL~KlidVi~V~~~~~~~~v 83 (164) T 2f1f_A 17 LSRVIGL-FSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHV 83 (164) T ss_dssp HHHHHHH-HHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGSCEE T ss_pred HHHHHHH-HHCCCCCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCEE T ss_conf 9999999-851675456788723379991799999989999999999998377358998518998668 No 30 >3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Probab=34.12 E-value=16 Score=15.71 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.9 Q ss_pred CCCCCCEEEEEEEEEE Q ss_conf 6785110168888530 Q gi|254780874|r 193 ASGRVHTSAATVAVLP 208 (357) Q Consensus 193 s~gR~hTS~a~V~V~P 208 (357) .-|||.||.|-|.+.| T Consensus 74 gtGRRKtAiArV~l~~ 89 (197) T 3bbn_I 74 GTGRRKCAIARVVLQE 89 (197) T ss_dssp CCCEETTEEEEEEEEE T ss_pred EECCCCCEEEEEEEEE T ss_conf 6468815799999980 No 31 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=32.81 E-value=20 Score=15.01 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=12.2 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 886226885217889999999999998764984 Q gi|254780874|r 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 (357) Q Consensus 114 lEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk 146 (357) |.|.||.||..-..-+-.-.+-..++...++++ T Consensus 163 M~V~PGf~GQ~f~~~~l~kI~~l~~~~~~~~~~ 195 (246) T 3inp_A 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRD 195 (246) T ss_dssp ECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSC T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 421698876114577999999999887524777 No 32 >3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D* Probab=32.20 E-value=22 Score=14.63 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=5.8 Q ss_pred CEEEEEECCCCCC Q ss_conf 0378862268852 Q gi|254780874|r 111 SCILEIRAGTGGS 123 (357) Q Consensus 111 nailEI~aGaGG~ 123 (357) .-|+++.-|.-|. T Consensus 820 g~IvQF~yG~Dgl 832 (1407) T 3lu0_D 820 IMMTPVIEGGDVK 832 (1407) T ss_dssp CEEEESSCCCSSS T ss_pred CEEEEEECCCCCC T ss_conf 0899951287320 No 33 >1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A Probab=31.76 E-value=14 Score=16.07 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=11.0 Q ss_pred HHHHHHHCCCCCC Q ss_conf 9999876498400 Q gi|254780874|r 136 YERYAALRKWKVE 148 (357) Q Consensus 136 Y~r~ae~~gwk~e 148 (357) |-.||+++||++- T Consensus 98 Ya~Wc~k~gf~w~ 110 (138) T 1m0d_A 98 YGEFCEKHGIKFA 110 (138) T ss_dssp HHHHHHHHTCCEE T ss_pred HHHHHHHCCCCCC T ss_conf 9999987498633 No 34 >2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=31.28 E-value=22 Score=14.59 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=20.2 Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEE Q ss_conf 5678511016888853033433222454347 Q gi|254780874|r 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 (357) Q Consensus 192 es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl 222 (357) .+-|||.||+|.|.+.|-.- .|.||..++ T Consensus 11 ~~~GrRKtaiArv~l~~G~G--~i~INgk~~ 39 (146) T 2zkq_i 11 QVFGRKKTATAVAHCKRGNG--LIKVNGRPL 39 (146) T ss_dssp EECCBCSSCEEEEEEEESSS--CEEETTEEH T ss_pred EEECCCEEEEEEEEEEECCC--CEEECCCCH T ss_conf 99674603899999992766--589879458 No 35 >1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20 Probab=30.65 E-value=23 Score=14.46 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999987649840 Q gi|254780874|r 129 VGDLFRMYERYAALRKWKV 147 (357) Q Consensus 129 A~~L~rMY~r~ae~~gwk~ 147 (357) ..+||..|..||+++|++. T Consensus 19 r~~lY~~Y~~~C~~~~~~~ 37 (76) T 1dp7_P 19 RSTLYNHYLLHSQEQKLEP 37 (76) T ss_dssp HHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHHCCCCC T ss_conf 7999999999999859966 No 36 >1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Probab=29.39 E-value=24 Score=14.31 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=64.4 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 99899999997203785356654332223320005778889998640001135540378862268852178899999999 Q gi|254780874|r 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 (357) Q Consensus 56 ~~ei~el~eLl~e~e~D~El~elAeeEl~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rM 135 (357) .+.+..+...+.+..+++++.+.+.++...+..+..+....+-..- .+--.+.+.||+ |..+|..-...|-.-|-=+ T Consensus 97 ~nAv~rv~~~l~~~~~~~~~~~~~~~~a~~~~~ed~~~~~~i~~~g--~~~i~~g~~iLT-h~~s~~lat~~~gTal~~i 173 (347) T 1t9k_A 97 FWALNRMEKVFFENADRENLFEILENEALKMAYEDIEVNKAIGKNG--AQLIKDGSTILT-HCNAGALATVDYGTALGVI 173 (347) T ss_dssp HHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCTTEEEEE-CSCCSGGGSSSSCSHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCEEEE-ECCCCHHHEECCCCHHHHE T ss_conf 9999999986441588688999999999999999999999999855--775348988998-5587513101343201023 Q ss_pred HHHHHHHCCCCCCHHHHCCCCCC-----------CCCEEEEEEECCCHHHHHHCC-------CCCEEEE Q ss_conf 99998764984001321135447-----------721113777503111210002-------4650267 Q gi|254780874|r 136 YERYAALRKWKVEVLSSSDNDDG-----------GYKEIVATISGRGVFSRMKFE-------SGVHRVQ 186 (357) Q Consensus 136 Y~r~ae~~gwk~eii~~~~ge~a-----------Gik~v~~~I~G~~aYg~Lk~E-------~GvHRvq 186 (357) +.-+...+.|+|=+.+.-|.-.| ||. +++.. +.+=+++-.. -|.|||. T Consensus 174 ~~a~~~gk~~~V~v~EtrP~~qG~~lta~~L~~~GI~-~tlI~--D~a~~~~m~~~~Vd~VivGAd~v~ 239 (347) T 1t9k_A 174 RAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIE-VYVIT--DNMAGWLMKRGLIDAVVVGADRIA 239 (347) T ss_dssp HHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCE-EEEEC--GGGHHHHHHTTCCSEEEECCSEEE T ss_pred EEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCE-EEEEE--CCHHHHHHHHCCCCEEEECCCCCC T ss_conf 6775069547999626887663168899998654822-89996--548888865344007885010024 No 37 >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Probab=29.39 E-value=24 Score=14.31 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCC--------CCCCCCCEEE Q ss_conf 322233200057788899986--4000--------1135540378 Q gi|254780874|r 80 QIEVLAIEKEIRELENEINYL--LLPK--------DTDDDKSCIL 114 (357) Q Consensus 80 eeEl~~l~~~l~~le~eL~~~--LLps--------de~D~~nail 114 (357) .+++..+++++..+++++..+ .+|+ |+.++.|.++ T Consensus 82 k~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~i 126 (455) T 2dq0_A 82 VKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPI 126 (455) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE T ss_conf 999999999999999999999972767778666878886666467 No 38 >2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} Probab=28.23 E-value=13 Score=16.20 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=12.9 Q ss_pred HHHHHHCCCCCCHHHHCC Q ss_conf 999876498400132113 Q gi|254780874|r 137 ERYAALRKWKVEVLSSSD 154 (357) Q Consensus 137 ~r~ae~~gwk~eii~~~~ 154 (357) .+||+++||.++|++-.. T Consensus 65 i~yA~k~g~~y~V~ep~~ 82 (106) T 2jya_A 65 EAYAQRKGIEYRVILPKE 82 (106) T ss_dssp HHHHHHHTCEEEECCCTT T ss_pred HHHHHHCCCEEEEECCCC T ss_conf 999998698399975676 No 39 >2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A 2pmz_A 3hkz_A Probab=27.40 E-value=26 Score=14.07 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=29.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC Q ss_conf 8521788999999999999876498400132113544 Q gi|254780874|r 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 (357) Q Consensus 121 GG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~ 157 (357) |...|..|...+.++-.+|+..+||++-+-|....+. T Consensus 620 G~~~~~~fld~lq~l~~~~l~~~GfSvgi~D~~~~~~ 656 (880) T 2waq_A 620 SDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDD 656 (880) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCCCGGGTCCCSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH T ss_conf 2288999999999999999874576302352046577 No 40 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Probab=26.48 E-value=27 Score=13.96 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=31.5 Q ss_pred HHHHH-HHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999-85385315-79999999998799999999999999998999999972 Q gi|254780874|r 17 AEIEL-RMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 (357) Q Consensus 17 ~ELE~-~Lsdp~~w-~d~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~ 67 (357) ..+.. .+++|+|- +...++|+-...|...+.....|....+.+..++.-+. T Consensus 138 ~ki~k~yi~~~~F~~e~i~k~S~Aa~~L~~WV~A~~~y~~v~k~v~plk~eL~ 190 (536) T 3err_A 138 EKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ 190 (536) T ss_dssp HHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999755687889999999889999999999887449999999876688899 No 41 >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Probab=23.78 E-value=30 Score=13.68 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=10.0 Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEE Q ss_conf 46502676125456785110168888530 Q gi|254780874|r 180 SGVHRVQRVPATEASGRVHTSAATVAVLP 208 (357) Q Consensus 180 ~GvHRvqRip~~es~gR~hTS~a~V~V~P 208 (357) -||=|+.-| ++....+-|-..+|...| T Consensus 1099 lGvPRLkEI--in~skniKTPs~tv~l~~ 1125 (1752) T 3h0g_A 1099 LGVPRLKEI--LNVAKNIKTPSLTIYLMP 1125 (1752) T ss_dssp CSGGGHHHH--HTTCSCCSCCCCEECCCS T ss_pred CCCCHHHHH--HHHHCCCCCCEEEEEECC T ss_conf 166035435--555036777616897422 No 42 >1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Probab=23.03 E-value=31 Score=13.52 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=24.5 Q ss_pred CCCCCCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 0011355-403788622688521788999999999999876498400132113 Q gi|254780874|r 103 PKDTDDD-KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 (357) Q Consensus 103 psde~D~-~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ 154 (357) .+++... .....++.++.||..+.+ .+--|.+|+++..+ T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~W~iE~~~~~~ 68 (381) T 1n4k_A 29 TCDEHRKKQHVFLRTTGRQSATSATS-------------SKALWEVEVVQHDP 68 (381) T ss_dssp EEEECSSSEEEEEECCCSSSGGGCCC-------------GGGCEEEEECC--- T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCC-------------CCCCEEEEECCCCC T ss_conf 34785677653366741477777788-------------76708998356776 No 43 >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Probab=22.26 E-value=12 Score=16.65 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=43.6 Q ss_pred HHHHCCCCCCCCCCEEEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHH Q ss_conf 9864000113554037886226--88521788999999999999876498400132113544772111377750311121 Q gi|254780874|r 98 NYLLLPKDTDDDKSCILEIRAG--TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 (357) Q Consensus 98 ~~~LLpsde~D~~nailEI~aG--aGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~aYg~ 175 (357) ...|+......-..+| =++-- ....|..++...+..+|..+ |+.+-.++...++ |+....-.++|.-.. T Consensus 107 dR~Lv~a~~~~i~~vi-vlnK~DL~~~~~~~~~~~~~~~~y~~~----gy~v~~vSa~~~~--gl~~L~~~l~~k~sv-- 177 (307) T 1t9h_A 107 DRFLVLVEANDIQPII-CITKMDLIEDQDTEDTIQAYAEDYRNI----GYDVYLTSSKDQD--SLADIIPHFQDKTTV-- 177 (307) T ss_dssp HHHHHHHHTTTCEEEE-EEECGGGCCCHHHHHHHHHHHHHHHHH----TCCEEECCHHHHT--TCTTTGGGGTTSEEE-- T ss_pred HHHHHHHHHCCCCEEE-EEECHHCCCCHHHHHHHHHHHHHHHHC----CCCEEEEECCCCH--HHHHHHHHHHCCEEE-- T ss_conf 9999999987994899-996320168488999999999998527----8743885068851--088999885187999-- Q ss_pred HHCCCCC--------------EEEEEECCCCCCCCCCEEEEEEEEE Q ss_conf 0002465--------------0267612545678511016888853 Q gi|254780874|r 176 MKFESGV--------------HRVQRVPATEASGRVHTSAATVAVL 207 (357) Q Consensus 176 Lk~E~Gv--------------HRvqRip~~es~gR~hTS~a~V~V~ 207 (357) |-+.||| -+..=||.....|| ||++.+-.+. T Consensus 178 ~~G~SGVGKSSLiN~L~~~~~~~T~~vs~~~~rGr-HTTt~~~l~~ 222 (307) T 1t9h_A 178 FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGK-HTTRHVELIH 222 (307) T ss_dssp EEESHHHHHHHHHHHHCC--------------------CCCCCEEE T ss_pred EECCCCCCHHHHHHCCCCHHCEEECCEECCCCCCE-EEEEHHHHHC T ss_conf 99989855888975138600001005132169970-1522513315 No 44 >1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Probab=22.15 E-value=28 Score=13.86 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=21.8 Q ss_pred HHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCC Q ss_conf 999998764984001321135447721113777503111210002465026761254 Q gi|254780874|r 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 (357) Q Consensus 135 MY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~ 191 (357) -|..|+..+.|.+ ||. + .+++.+|.|-|+.++.. T Consensus 20 ~Y~~Wa~~~~f~v-------GD~-----l-----------~F~y~~~~h~V~~vs~~ 53 (116) T 1x9u_A 20 FYITWATGKTFRV-------GDE-----L-----------EFDFAAGMHDVAVVTKD 53 (116) T ss_dssp HHHHHHTTCCEET-------TCE-----E-----------EECCCTTTCCEEEECHH T ss_pred HHHHCCCCCCEEC-------CCE-----E-----------EEEECCCCCEEEEECHH T ss_conf 3243224784848-------999-----9-----------99737998508997978 No 45 >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6 d.58.18.6 Probab=21.79 E-value=33 Score=13.35 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=54.0 Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCC-----HHHHHHCCCCCEEE Q ss_conf 0378862268852178899999999999987649840013211354477211137775031-----11210002465026 Q gi|254780874|r 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFESGVHRV 185 (357) Q Consensus 111 nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~-----aYg~Lk~E~GvHRv 185 (357) .++++=+||+ |.|+=. -..++||.++-+...+++..|+...|+-+.|+. +-..|.-=--|++| T Consensus 33 svlVeN~pGv-----------L~RV~g-lFsrRg~NIeSLsv~~te~~~iSRmTIv~~~~~~~i~qi~kQl~KLIdVi~V 100 (193) T 2fgc_A 33 SMLVHNKPGV-----------MRKVAN-LFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKV 100 (193) T ss_dssp EEEEECCTTH-----------HHHHHH-HHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEE T ss_pred EEEEECCCCH-----------HHHHHH-HHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEE T ss_conf 9999787888-----------999999-9864896854678502588884899999648989999999998637776899 Q ss_pred EEECCCCCCCC Q ss_conf 76125456785 Q gi|254780874|r 186 QRVPATEASGR 196 (357) Q Consensus 186 qRip~~es~gR 196 (357) +-+.+.+..-+ T Consensus 101 ~dl~~~~~~~~ 111 (193) T 2fgc_A 101 TPIDPLPENRV 111 (193) T ss_dssp EECCSSGGGEE T ss_pred EEECCCCHHHH T ss_conf 87323413678 No 46 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=21.64 E-value=33 Score=13.33 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=46.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHH--- Q ss_conf 78689899999999999998538531--57999999999879999999999999999899999-9972037853566--- Q gi|254780874|r 3 FLSHKQICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH-TVIGDHNSDSEIR--- 76 (357) Q Consensus 3 mi~~~kL~~l~~rl~ELE~~Lsdp~~--w~d~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~-eLl~e~e~D~El~--- 76 (357) |+..+ -|+...+.+...+..-++ .....++-+-..+.+.+...++.+....+.+..-. .+....++..++. T Consensus 1 MlDik---~iRen~e~v~~~l~~R~~~~~~~id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~~~~l~~~~ 77 (425) T 2dq3_A 1 MIDIN---LIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRV 77 (425) T ss_dssp CCCHH---HHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHH T ss_pred CCCHH---HHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 98978---887699999999987099825559999999999999999999999999999999999986798899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HCCC--------CCCCCCCEEEEE Q ss_conf 543322233200057788899986--4000--------113554037886 Q gi|254780874|r 77 DLAQIEVLAIEKEIRELENEINYL--LLPK--------DTDDDKSCILEI 116 (357) Q Consensus 77 elAeeEl~~l~~~l~~le~eL~~~--LLps--------de~D~~nailEI 116 (357) ....+++..++.++..++.++... .+|+ |+.++.|.++.. T Consensus 78 ~~lk~~i~~le~~~~~i~~~l~~~ll~IPNi~~~~VP~G~de~dN~~i~~ 127 (425) T 2dq3_A 78 KELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRR 127 (425) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC T ss_conf 99999999999999999999999997278987888899987225678833 No 47 >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} Probab=21.44 E-value=15 Score=15.83 Aligned_cols=136 Identities=13% Similarity=0.203 Sum_probs=59.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHH Q ss_conf 8689899999999999998538531579999999998799999999999999998999999972037--85356654332 Q gi|254780874|r 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN--SDSEIRDLAQI 81 (357) Q Consensus 4 i~~~kL~~l~~rl~ELE~~Lsdp~~w~d~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e--~D~El~elAee 81 (357) ++.+.|++++.++++|..++-+ ....-.++..+..+++..... .-|+ -..+-+-+..+.+... -+++..+-.-. T Consensus 25 m~~~~L~~lR~~ID~ID~~il~--Ll~~R~~l~~~Ig~~K~~~~~-~i~d-p~RE~~vl~ri~~~~~g~l~~~~i~~I~r 100 (385) T 3nvt_A 25 MVNTNLEELRTQVDQLNIDLLE--LISKRANLVQEIGKIKGTQGS-LRFD-PLREREMLNTILAANEGPFEDSTVQKLFK 100 (385) T ss_dssp -------CCTTTTTHHHHHHHH--HHHHHHHHHHHHHHHCC------CCC-HHHHHHHHHHHHHHCCSSSCHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCC-CCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 6703399999999999999999--999999999999997753699-7408-29999999999985789989999999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCEEEEEECC-CCCCH-------HHHHHHHHHHHHHHHHHHCCCC Q ss_conf 2233200057788899-9864000113554037886226-88521-------7889999999999998764984 Q gi|254780874|r 82 EVLAIEKEIRELENEI-NYLLLPKDTDDDKSCILEIRAG-TGGSE-------AALFVGDLFRMYERYAALRKWK 146 (357) Q Consensus 82 El~~l~~~l~~le~eL-~~~LLpsde~D~~nailEI~aG-aGG~E-------A~dwA~~L~rMY~r~ae~~gwk 146 (357) ++......+ +.++ ...|+|+.++...+-+++|..= -||.+ +..|..+++..+-+-+...|.+ T Consensus 101 ~Ii~~s~~l---q~~~~~~~l~~~r~~~~~~t~i~i~~~~~G~~~~~~IaGPCsiEs~e~~~~~A~~lk~~~~~ 171 (385) T 3nvt_A 101 EIFKAGLEL---QEEDHSKALLVSRKNKKEDTIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLK 171 (385) T ss_dssp HHHHHHHTT---STTCCTTSCTTBTTTCCSCCCEEETTEEETSSSCEEEEECSBCCCHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHH---HHHCCCCCCCCCCCCCCCCCEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC T ss_conf 999999999---75335453466776678998899899998799878998788238999999999999866971 No 48 >1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Probab=20.99 E-value=34 Score=13.24 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=15.6 Q ss_pred CCCCEEEEEECCCCEEEEEC Q ss_conf 32121588964984488843 Q gi|254780874|r 239 TTDSAVRITHIPTGIMVTSS 258 (357) Q Consensus 239 ~t~savri~H~ptgi~v~~~ 258 (357) ...+.+||.|++||--.++. T Consensus 127 ~~~~~fRLkH~~t~~yL~ss 146 (187) T 1t9f_A 127 LESEQFKLRHAVTGSYLSLS 146 (187) T ss_dssp BTTSEEEEEETTTCCEEEEE T ss_pred CCCCEEEEEECCCCEEEEEC T ss_conf 15754999998889799617 Done!