HHSEARCH alignment of GI: 254780874 and SCOP domain: d1gqea_

Alignment
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=933.05  Aligned_cols=331  Identities=34%  Similarity=0.549  Sum_probs=307.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             899999999999998538531579---99999999879999999999999999899999997203785356654332223
Q gi|254780874|r    8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL   84 (357)
Q Consensus         8 kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~   84 (357)
                      .++.++.|+.+|+.+|++|+||+|   +++++|+++.|+++++.|+.|.+...++.++.+++.+ ++|+++.++++.++.
T Consensus        23 Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~e-e~deel~~e~~~~l~  101 (362)
T d1gqea_          23 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELD  101 (362)
T ss_dssp             THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf             9798999999999986397144499999999999999999999999999999988877877641-105888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEE
Q ss_conf             32000577888999864000113554037886226885217889999999999998764984001321135447721113
Q gi|254780874|r   85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV  164 (357)
Q Consensus        85 ~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~  164 (357)
                      .+...+++    |+..+||+||+|.+||||||||||||+||||||+||||||+|||+++||+++++++++|++||||+|+
T Consensus       102 ~l~~~l~~----le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~gG~K~v~  177 (362)
T d1gqea_         102 ALEEKLAQ----LEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT  177 (362)
T ss_dssp             HHHHHHHH----HGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE
T ss_pred             HHHHHHHH----HHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEE
T ss_conf             98622467----78752136754545437999825760668899999999999999975985899414567766546999


Q ss_pred             EEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf             7775031112100024650267612545678511016888853033-433222454347999852888752000632121
Q gi|254780874|r  165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA  243 (357)
Q Consensus       165 ~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~sa  243 (357)
                      |.|+|+||||+||+|+|||||||||||+++||||||||+|+|+|++ ++++++|+|+||+|||||||||||||||||+||
T Consensus       178 ~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~sa  257 (362)
T d1gqea_         178 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA  257 (362)
T ss_dssp             EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE
T ss_pred             EEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEEEECCCCCCCCHHHHHCE
T ss_conf             99977668899987237504888404677734799877889962478763111176782799752699886512033141


Q ss_pred             EEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCEEECCCCCCCEEEEE
Q ss_conf             588964984488-8436541358999999999999999999999999874--4652246742382210448998112432
Q gi|254780874|r  244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGRITDHR  320 (357)
Q Consensus       244 vri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~--r~~~~g~~~rs~~iRtY~~~~~rv~DhR  320 (357)
                      |||||+||||+| ||+|||||+||++||++|++|||+++.+++.++....  ++.++|   ||+||||||||||||||||
T Consensus       258 vri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~iRtY~~~~~rv~DhR  334 (362)
T d1gqea_         258 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG---WGSQIRSYVLDDSRIKDLR  334 (362)
T ss_dssp             EEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCC---SCSEEEEEEGGGTEEEETT
T ss_pred             EEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCC
T ss_conf             6887447336777642210147899999999999999999999999998874231275---7698467658998150005


Q ss_pred             CCCEECCHHHHHCCCHHHHHHHHHHH
Q ss_conf             16441787787288669999999999
Q gi|254780874|r  321 INLTLYKLEYVLQGYIDDIINPLLTA  346 (357)
Q Consensus       321 ~~~~~~~~~~~l~G~l~~~i~~~~~~  346 (357)
                      ||++++|+++||+|+||+||++|++.
T Consensus       335 ~~~~~~~~~~vl~G~ld~~i~a~l~~  360 (362)
T d1gqea_         335 TGVETRNTQAVLDGSLDQFIEASLKA  360 (362)
T ss_dssp             TCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred             CCCEECCHHHHHCCCHHHHHHHHHHC
T ss_conf             39725784687588779999999877


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]