HHSEARCH alignment of GI: 254780874 and SCOP domain: d2b3tb1

Alignment
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=938.66  Aligned_cols=339  Identities=50%  Similarity=0.851  Sum_probs=327.9

Q ss_pred             HHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             999999999998538531579---99999999879999999999999999899999997203785356654332223320
Q gi|254780874|r   11 DLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIE   87 (357)
Q Consensus        11 ~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~~l~   87 (357)
                      .|+.||+||+.+|++|++|+|   +++++||++.|+++++.|+.|.+..+++.++.+|+.    |+++.++|++|+..+.
T Consensus         1 Ai~eR~eELe~~LsdPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~dleel~eL~e----D~E~~ela~eEl~el~   76 (344)
T d2b3tb1           1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD----DPEMREMAQDELREAK   76 (344)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred             CHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_conf             968999999998609850009999999999999999999999999999998999998827----9524999987666655


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEE
Q ss_conf             00577888999864000113554037886226885217889999999999998764984001321135447721113777
Q gi|254780874|r   88 KEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI  167 (357)
Q Consensus        88 ~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I  167 (357)
                      ..+++++.+++..|+|++|+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|++||||+|+|.|
T Consensus        77 ~~l~~le~~l~~~ll~~~~~D~~~aileI~aGaGG~EA~dwA~~L~rMY~r~ae~~g~k~evl~~~~ge~~Gik~~~~~i  156 (344)
T d2b3tb1          77 EKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKI  156 (344)
T ss_dssp             --------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEEE
T ss_conf             45567788889873144223444448999516665789999999999999999873986034223555678602799999


Q ss_pred             ECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf             503111210002465026761254567851101688885303343-3222454347999852888752000632121588
Q gi|254780874|r  168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI  246 (357)
Q Consensus       168 ~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri  246 (357)
                      +|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ ..++|+|+||+|||||||||||||||||+|||||
T Consensus       157 ~G~~ay~~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi  236 (344)
T d2b3tb1         157 SGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRI  236 (344)
T ss_dssp             CSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEE
T ss_pred             ECCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCEEEE
T ss_conf             75765523467522247986046531343143114675421245332344275644478842787554401014312489


Q ss_pred             EECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEE
Q ss_conf             964984488-8436541358999999999999999999999999874465224674238221044899811243216441
Q gi|254780874|r  247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL  325 (357)
Q Consensus       247 ~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~  325 (357)
                      ||+||||+| ||+|||||+||++||++|++|||+.+++++.++..+.||+|||+|+||+|||||||||+||||||||+++
T Consensus       237 ~H~ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~~v~DhR~~~~~  316 (344)
T d2b3tb1         237 THLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTL  316 (344)
T ss_dssp             EETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTTTEEEEGGGTEEE
T ss_pred             EECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCEE
T ss_conf             98577638874577761689999999999999999999999999998760040012438447441598864201458866


Q ss_pred             CCHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7877872886699999999999999987
Q gi|254780874|r  326 YKLEYVLQGYIDDIINPLLTAHQAKMIG  353 (357)
Q Consensus       326 ~~~~~~l~G~l~~~i~~~~~~~~~~~l~  353 (357)
                      +|++.||+|+||+||++|+.|+++++|+
T Consensus       317 ~~~~~vl~G~ld~~i~~~~~~~~~~~l~  344 (344)
T d2b3tb1         317 YRLDEVMEGKLDMLIEPIIQEHQADQLA  344 (344)
T ss_dssp             SCHHHHHHTCTHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             7834764987499999999999998529


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Escherichia coli [TaxId: 562]