PSIBLAST alignment of GI: 254780874 and protein with PDB id: 1ml5
gi|28373696|pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 107/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%)
Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66
K R E+ + + + L +E +++ ++ + Q ++ L +
Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87
Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126
+ + + + A + E ++ + + D C L+I+AG+GG+EA
Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142
Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186
+ L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+
Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202
Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245
R ++ GR HTS ++ V PE +ID++I D+RID R SG+GGQHVN T+SAVR
Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVR 262
Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302
ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G
Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320
Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346
+IR+Y RI D R + + VL G +D I L A
Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363