RPSBLAST alignment of GI: 254780874 and protein with PDBid: 3d5a

>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X Length = 354

 Score =  244 bits (623), Expect = 3e-65
 Identities = 156/352 (44%), Positives = 219/352 (62%), Gaps = 10/352 (2%)

Query: 11  DLKNRFAEIELRMSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66
            L+  + E+E  +S  P V      Y  L+  YA +  +I  I  Y +  ++ +   +++
Sbjct: 7   RLEEEYRELEALLS-DPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL 65

Query: 67  GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126
                D E++++A+ E  A+      LE E+   LLPKD  D++  I+EIRAGTGG EAA
Sbjct: 66  ----DDPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAA 121

Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186
           LF  DLF MY R+A    ++ EVL S   D GG+ ++V  + G G +   K+ESGVHRVQ
Sbjct: 122 LFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQ 181

Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246
           RVP TE  GR+HTS ATVAVLP+A E D  + +++IRID MRASG GGQ VNTTDSAVR+
Sbjct: 182 RVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRV 241

Query: 247 THIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305
            H+PTGI +     +SQ +NR +A+ +LR+RL +++R   A      R  QIG+G+RSE+
Sbjct: 242 VHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEK 301

Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
           IRTYNF Q R+TDHRI  T + LE VL G++  I+  L  A Q + + + +E
Sbjct: 302 IRTYNFPQSRVTDHRIGFTTHDLEGVLSGHLTPILEALKRADQERQLAALAE 353