HHsearch alignment for GI: 254780875 and conserved domain: COG0293

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=93.88  E-value=0.18  Score=30.14  Aligned_cols=133  Identities=21%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CC-CH
Q ss_conf             468605664214211233122223-33210013332220024442011000122222222222222---------21-00
Q gi|254780875|r   96 RDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------VE-GL  164 (264)
Q Consensus        96 ~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~~-~~  164 (264)
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~---------~--~~-V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I--PG-VIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC---------C--CC-CEEEEEECCCCCHHHHHHHHCCCCC
T ss_conf             5898799838799849999999738888489997754556---------7--89-4688413248437999998707787


Q ss_pred             HHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH--H
Q ss_conf             23332011-33321001221111123575433210112321025689999985378878999817667999999999--7
Q gi|254780875|r  165 FDVIVSNP-PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE--S  241 (264)
Q Consensus       165 fD~IvsNP-PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~--~  241 (264)
T Consensus       112 ~DvV~sD~ap--~~~g~~~~-----Dh-~r~--------~~L~~~a~~~a~~vL~~~G~fv~K~--fqg~~~~~~l~~~~  173 (205)
T COG0293         112 VDVVLSDMAP--NTSGNRSV-----DH-ARS--------MYLCELALEFALEVLKPGGSFVAKV--FQGEDFEDLLKALR  173 (205)
T ss_pred             CCEEEECCCC--CCCCCCCC-----CH-HHH--------HHHHHHHHHHHHHEECCCCEEEEEE--EECCCHHHHHHHHH
T ss_conf             6668725887--76787220-----08-899--------9999999999987257898399999--75798799999999


Q ss_pred             CCCCEEEEEECCCCCCE
Q ss_conf             89805899805689975
Q gi|254780875|r  242 RKLFLVNAFKDYGGNDR  258 (264)
Q Consensus       242 ~gf~~v~~~kD~~g~~R  258 (264)
T Consensus       174 ~~F~~v~~~KP~aSR~~  190 (205)
T COG0293         174 RLFRKVKIFKPKASRKR  190 (205)
T ss_pred             HHHCEEEEECCCCCCCC
T ss_conf             86320677358554677