HHsearch alignment for GI: 254780875 and conserved domain: COG1189

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=94.90  E-value=0.062  Score=33.15  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCC----CCCCHHHHHH
Q ss_conf             2468605664214211233122223332100133322200244420110001222222222-2222----2210023332
Q gi|254780875|r   95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS-DWFS----SVEGLFDVIV  169 (264)
Q Consensus        95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~-d~~~----~~~~~fD~Iv  169 (264)
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~-lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~v  149 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDV-LLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLIV  149 (245)
T ss_pred             CCCCCEEEEECCCCCCHHHH-HHHCCCCEEEEEECCCCCCCHHHHC------CCCEEEEECCCHHHCCHHHCCCCCCEEE
T ss_conf             88997899826787629999-9875874799997037743786735------9847998527831189878176778479


Q ss_pred             HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE------EECCC-------------
Q ss_conf             01133321001221111123575433210112321025689999985378878999------81766-------------
Q gi|254780875|r  170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV------EIGYN-------------  230 (264)
Q Consensus       170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l------Eig~~-------------  230 (264)
T Consensus       150 ~DvSFISL-----------------------------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~  200 (245)
T COG1189         150 IDVSFISL-----------------------------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL  200 (245)
T ss_pred             EEEEHHHH-----------------------------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEECCCCH
T ss_conf             96423319-----------------------------9888999974278863899736555540432276863448015


Q ss_pred             H---HHHHHHHHHHCCCCEEEEE
Q ss_conf             7---9999999997898058998
Q gi|254780875|r  231 Q---KVDVVRIFESRKLFLVNAF  250 (264)
Q Consensus       231 q---~~~v~~ll~~~gf~~v~~~  250 (264)
T Consensus       201 ~~~v~~~i~~~~~~~g~~~~gl~  223 (245)
T COG1189         201 HAEVLSKIENFAKELGFQVKGLI  223 (245)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             89999999988864595786557