HHsearch alignment for GI: 254780875 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=99.11 E-value=1.5e-10 Score=89.81 Aligned_cols=148 Identities=28% Similarity=0.343 Sum_probs=104.5
Q ss_pred EEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 3767750462051--22356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 62 NVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 62 ~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~ 333 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQE 333 (432)
T ss_pred CEEEEECCCCCEEECHHHHHHHHHHHHHHH----HCCCCCEEEECCCCCCHHHHHHCCC--CCEEEEEECCHHHHHHHHH
T ss_conf 638875799741339999999999999997----4369977999355887013553124--6579999648999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01100012222222222222221-----0023332011333210012211111235754332101123210256899999
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVE-----GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVS 214 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~-----~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~ 214 (264)
T Consensus 334 NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR------~--------------------G~~--~~~lk~l- 383 (432)
T COG2265 334 NAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPR------A--------------------GAD--REVLKQL- 383 (432)
T ss_pred HHHHCCCCC-EEEEECCHHHHHHHHCCCCCCCEEEECCCC------C--------------------CCC--HHHHHHH-
T ss_conf 999739887-799958688886510025799989989999------9--------------------999--8999999-
Q ss_pred HHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCE
Q ss_conf 853788789998176-67999999999789805
Q gi|254780875|r 215 RHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFL 246 (264)
Q Consensus 215 ~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~ 246 (264)
T Consensus 384 ~~~~p~~IvYVSCNP~TlaRDl-~~L~~~gy~i 415 (432)
T COG2265 384 AKLKPKRIVYVSCNPATLARDL-AILASTGYEI 415 (432)
T ss_pred HHCCCCCEEEEECCHHHHHHHH-HHHHHCCEEE
T ss_conf 8558986899976878889899-9998579048