HHsearch alignment for GI: 254780875 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=99.84 E-value=3.5e-21 Score=159.81 Aligned_cols=138 Identities=30% Similarity=0.436 Sum_probs=111.2
Q ss_pred EEEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 237677504620512---23565553101233211012468605664214211233122223332100133322200244
Q gi|254780875|r 61 YNVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137 (264)
Q Consensus 61 ~~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A 137 (264)
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~--------~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLP--------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA 198 (300)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHCC--------CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 75269948987759886838899997377--------5569968870788429999999868987289982669999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 42011000122222222222222210023332011333210012211111235754332101123210256899999853
Q gi|254780875|r 138 KSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHL 217 (264)
Q Consensus 138 ~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L 217 (264)
T Consensus 199 r~Nl~~N~~~~~-~v~~s~~~~~v~~kfd~IisNPPfh~G-------~~v---~~-----------~~~~~ii~~A~~~L 256 (300)
T COG2813 199 RKNLAANGVENT-EVWASNLYEPVEGKFDLIISNPPFHAG-------KAV---VH-----------SLAQEIIAAAARHL 256 (300)
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCCCCCCEEEECCCCCCC-------CCH---HH-----------HHHHHHHHHHHHHH
T ss_conf 876997398763-799812446654400689848884677-------101---67-----------88999999999760
Q ss_pred CCCCEEEEEEC
Q ss_conf 78878999817
Q gi|254780875|r 218 NKDGLCSVEIG 228 (264)
Q Consensus 218 ~~~G~l~lEig 228 (264)
T Consensus 257 ~~gGeL~iVan 267 (300)
T COG2813 257 KPGGELWIVAN 267 (300)
T ss_pred CCCCEEEEEEC
T ss_conf 45977999975