HHsearch alignment for GI: 254780875 and conserved domain: COG5459

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=91.21  E-value=0.84  Score=25.71  Aligned_cols=138  Identities=23%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             235655531012332110124686056642142112331222233321-0013332220024442011000122222222
Q gi|254780875|r   76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKSNAVTNGVSERFDTLQ  154 (264)
Q Consensus        76 peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~  154 (264)
T Consensus        92 p~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t------l~~nv~t~~  165 (484)
T COG5459          92 PQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT------LAENVSTEK  165 (484)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH------HHHHCCCCC
T ss_conf             57899999999999974888686102003778752123320337880221234048999999999------986045334


Q ss_pred             CCCCCC--------C--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCEE
Q ss_conf             222222--------2--10023332011333210012211111235754332101123210-256899999853788789
Q gi|254780875|r  155 SDWFSS--------V--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSH-YRTIADGVSRHLNKDGLC  223 (264)
Q Consensus       155 ~d~~~~--------~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~-~~~ii~~~~~~L~~~G~l  223 (264)
T Consensus       166 td~r~s~vt~dRl~lp~ad~ytl~i~------~~e---Ll~---------------d~~ek~i~~~ie~lw~l~~~gg~l  221 (484)
T COG5459         166 TDWRASDVTEDRLSLPAADLYTLAIV------LDE---LLP---------------DGNEKPIQVNIERLWNLLAPGGHL  221 (484)
T ss_pred             CCCCCCCCCHHCCCCCCCCEEEHHHH------HHH---HCC---------------CCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             77778865021047883223633343------544---443---------------557431889999999860689749


Q ss_pred             E-EEECCCHH----HHHHHHHHHCC
Q ss_conf             9-98176679----99999999789
Q gi|254780875|r  224 S-VEIGYNQK----VDVVRIFESRK  243 (264)
Q Consensus       224 ~-lEig~~q~----~~v~~ll~~~g  243 (264)
T Consensus       222 VivErGtp~Gf~~I~rAR~~ll~~~  246 (484)
T COG5459         222 VIVERGTPAGFERILRARQILLAPG  246 (484)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             9971798236999999999984577