HHsearch alignment for GI: 254780875 and conserved domain: COG5459
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=91.21 E-value=0.84 Score=25.71 Aligned_cols=138 Identities=23% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 235655531012332110124686056642142112331222233321-0013332220024442011000122222222
Q gi|254780875|r 76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK-GVGVDISCKALEIAKSNAVTNGVSERFDTLQ 154 (264)
Q Consensus 76 peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~-v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~ 154 (264)
T Consensus 92 p~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t------l~~nv~t~~ 165 (484)
T COG5459 92 PQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT------LAENVSTEK 165 (484)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH------HHHHCCCCC
T ss_conf 57899999999999974888686102003778752123320337880221234048999999999------986045334
Q ss_pred CCCCCC--------C--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCEE
Q ss_conf 222222--------2--10023332011333210012211111235754332101123210-256899999853788789
Q gi|254780875|r 155 SDWFSS--------V--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSH-YRTIADGVSRHLNKDGLC 223 (264)
Q Consensus 155 ~d~~~~--------~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~-~~~ii~~~~~~L~~~G~l 223 (264)
T Consensus 166 td~r~s~vt~dRl~lp~ad~ytl~i~------~~e---Ll~---------------d~~ek~i~~~ie~lw~l~~~gg~l 221 (484)
T COG5459 166 TDWRASDVTEDRLSLPAADLYTLAIV------LDE---LLP---------------DGNEKPIQVNIERLWNLLAPGGHL 221 (484)
T ss_pred CCCCCCCCCHHCCCCCCCCEEEHHHH------HHH---HCC---------------CCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 77778865021047883223633343------544---443---------------557431889999999860689749
Q ss_pred E-EEECCCHH----HHHHHHHHHCC
Q ss_conf 9-98176679----99999999789
Q gi|254780875|r 224 S-VEIGYNQK----VDVVRIFESRK 243 (264)
Q Consensus 224 ~-lEig~~q~----~~v~~ll~~~g 243 (264)
T Consensus 222 VivErGtp~Gf~~I~rAR~~ll~~~ 246 (484)
T COG5459 222 VIVERGTPAGFERILRARQILLAPG 246 (484)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9971798236999999999984577