HHsearch alignment for GI: 254780875 and conserved domain: PRK00274
>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=98.17 E-value=2.7e-07 Score=68.43 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=67.3
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 42376775046205122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 60 F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
T Consensus 16 ~lGQnFL~d~~i----------i~kIv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~ 79 (267)
T PRK00274 16 SLGQNFLIDENI----------IDKIVRAA----DLQPGDRVLEIGPGLGALTEPLLERA--AKVTAIEIDRDLAPILRE 79 (267)
T ss_pred CCCCCCCCCHHH----------HHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHH
T ss_conf 778221489899----------99999960----89999907996388888999999626--805886368899999850
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCHHH
Q ss_conf 01100012222222222222221-----0023332011333
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSVE-----GLFDVIVSNPPYI 175 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~~-----~~fD~IvsNPPYI 175 (264)
T Consensus 80 ~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~ 113 (267)
T PRK00274 80 T-------DNLTIIEGDALKVDLEELAEGQPLKVVANLPYN 113 (267)
T ss_pred C-------CCEEEEECHHHHCCHHHHCCCCCEEEEECCCCH
T ss_conf 4-------786999650664786774567872799558830