HHsearch alignment for GI: 254780875 and conserved domain: PRK03522

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=99.33  E-value=3.3e-12  Score=100.80  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=114.5

Q ss_pred             EEEEEEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             14423767750462051--2235655531012332110124686056642142112331222233321001333222002
Q gi|254780875|r   58 RDFYNVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE  135 (264)
Q Consensus        58 ~~F~~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~  135 (264)
T Consensus       196 e~~~~~~f~isp~sFfQvN~~~~~~L~~~~~~~~~----~~~~~~vlDlycG~G~~sl~lA~~--~~~V~gvE~~~~av~  269 (375)
T PRK03522        196 ERFNDVPLFIRPQSFFQTNPAVAAQLYATARDWVR----ELPPKSMWDLFCGVGGFGLHCATP--DMQLTGIEISAEAIA  269 (375)
T ss_pred             EEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCHHHHHHHHC--CCEEEEEEECHHHHH
T ss_conf             88888879975532146599999999999999863----158978999657853888987641--788999984599999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             44420110001222222222222222---100233320113332100122111112357543321011232102568999
Q gi|254780875|r  136 IAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG  212 (264)
Q Consensus       136 ~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~  212 (264)
T Consensus       270 ~A~~na~~ngi~n-v~f~~~d~~~~~~~~~~~~d~vvvDPPR--------------------------~Gl~--~~~~~~  320 (375)
T PRK03522        270 CAKQSAAELGLTN-VQFQALDSTQFATAQGEVPELVLVNPPR--------------------------RGIG--KPLCDY  320 (375)
T ss_pred             HHHHHHHHCCCCC-EEEEECCHHHHHHHCCCCCCEEEECCCC--------------------------CCCH--HHHHHH
T ss_conf             9999999869987-6999737788876345689789989997--------------------------7751--999999


Q ss_pred             HHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCC
Q ss_conf             99853788789998176-679999999997898058998-0568
Q gi|254780875|r  213 VSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYG  254 (264)
Q Consensus       213 ~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~  254 (264)
T Consensus       321 l~-~~~p~~IvYVSCnP~TlaRDl~~L---~gy~l~~v~~~DmF  360 (375)
T PRK03522        321 LS-QMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMF  360 (375)
T ss_pred             HH-HCCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEEECCC
T ss_conf             98-659996999907989999998884---39768899995369