HHsearch alignment for GI: 254780875 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=99.33 E-value=3.3e-12 Score=100.80 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=114.5
Q ss_pred EEEEEEEEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 14423767750462051--2235655531012332110124686056642142112331222233321001333222002
Q gi|254780875|r 58 RDFYNVRLTLSSDTFEP--RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE 135 (264)
Q Consensus 58 ~~F~~~~f~v~~~vLIP--RpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~ 135 (264)
T Consensus 196 e~~~~~~f~isp~sFfQvN~~~~~~L~~~~~~~~~----~~~~~~vlDlycG~G~~sl~lA~~--~~~V~gvE~~~~av~ 269 (375)
T PRK03522 196 ERFNDVPLFIRPQSFFQTNPAVAAQLYATARDWVR----ELPPKSMWDLFCGVGGFGLHCATP--DMQLTGIEISAEAIA 269 (375)
T ss_pred EEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCHHHHHHHHC--CCEEEEEEECHHHHH
T ss_conf 88888879975532146599999999999999863----158978999657853888987641--788999984599999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 44420110001222222222222222---100233320113332100122111112357543321011232102568999
Q gi|254780875|r 136 IAKSNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG 212 (264)
Q Consensus 136 ~A~~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~ 212 (264)
T Consensus 270 ~A~~na~~ngi~n-v~f~~~d~~~~~~~~~~~~d~vvvDPPR--------------------------~Gl~--~~~~~~ 320 (375)
T PRK03522 270 CAKQSAAELGLTN-VQFQALDSTQFATAQGEVPELVLVNPPR--------------------------RGIG--KPLCDY 320 (375)
T ss_pred HHHHHHHHCCCCC-EEEEECCHHHHHHHCCCCCCEEEECCCC--------------------------CCCH--HHHHHH
T ss_conf 9999999869987-6999737788876345689789989997--------------------------7751--999999
Q ss_pred HHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCC
Q ss_conf 99853788789998176-679999999997898058998-0568
Q gi|254780875|r 213 VSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYG 254 (264)
Q Consensus 213 ~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~ 254 (264)
T Consensus 321 l~-~~~p~~IvYVSCnP~TlaRDl~~L---~gy~l~~v~~~DmF 360 (375)
T PRK03522 321 LS-QMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMF 360 (375)
T ss_pred HH-HCCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEEECCC
T ss_conf 98-659996999907989999998884---39768899995369