HHsearch alignment for GI: 254780875 and conserved domain: PRK05031

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=99.07  E-value=3.2e-11  Score=94.32  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=100.6

Q ss_pred             EEEEEEECCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             376775046205--122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r   62 NVRLTLSSDTFE--PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS  139 (264)
Q Consensus        62 ~~~f~v~~~vLI--PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~  139 (264)
T Consensus       175 ~~~f~~~p~sFfQvN~~~~e~l~~~a~~~~~~----~~-~~vlDLYcG~Gtfsl~LA~~~~--~V~gVE~~~~aV~~A~~  247 (363)
T PRK05031        175 EFIYRQVENSFTQPNAAVNEKMLEWALDATKG----SK-GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQY  247 (363)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC----CC-CCEEEEECCCCHHHHHHHHHCC--EEEEEECCHHHHHHHHH
T ss_conf             46899679984247989999999999997613----89-8289860586642699886268--79999538999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC------------------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0110001222222222222222------------------1002333201133321001221111123575433210112
Q gi|254780875|r  140 NAVTNGVSERFDTLQSDWFSSV------------------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGID  201 (264)
Q Consensus       140 N~~~~~~~~~i~~~~~d~~~~~------------------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~d  201 (264)
T Consensus       248 NA~~N~i~N-~~fi~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR--------------------------~  300 (363)
T PRK05031        248 NIAANGIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPR--------------------------A  300 (363)
T ss_pred             HHHHCCCCC-EEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCC--------------------------C
T ss_conf             999869986-4999658999999873431010012466443558648989998--------------------------8


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC----CEEEEEEC
Q ss_conf             3210256899999853788789998176-679999999997898058998-056899----75999979
Q gi|254780875|r  202 GLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN----DRVLLFCR  264 (264)
Q Consensus       202 Gl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~----~R~vi~~r  264 (264)
T Consensus       301 Gl~--~~~~~~i~~-~~--rIVYVSCnP~TlaRDl~~L-~~-~y~l~~v~~vDmFPqT~HvE~valL~r  362 (363)
T PRK05031        301 GLD--EETLKLVQN-YE--RILYISCNPETLKENLETL-SQ-THKVERFALFDQFPYTHHMECGVLLEK  362 (363)
T ss_pred             CCC--HHHHHHHHC-CC--EEEEEECCHHHHHHHHHHH-HH-CCEEEEEEEECCCCCCCCEEEEEEEEE
T ss_conf             874--999999836-89--0999928989999999998-74-465889998426999972789999980