HHsearch alignment for GI: 254780875 and conserved domain: PRK09489

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=99.84  E-value=1.6e-21  Score=162.01  Aligned_cols=136  Identities=26%  Similarity=0.467  Sum_probs=109.2

Q ss_pred             EEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             37677504620512---235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r   62 NVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK  138 (264)
Q Consensus        62 ~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~  138 (264)
T Consensus       166 ~l~v~slPGVFS~~~lD~GS~lLL~~l--------~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar  237 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTL--------TPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASR  237 (342)
T ss_pred             CEEEECCCCCCCCCCCCHHHHHHHHHC--------CCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf             715833687578999787999999737--------832488478606781799999998699976999968899999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             20110001222222222222222100233320113332100122111112357543321011232102568999998537
Q gi|254780875|r  139 SNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLN  218 (264)
Q Consensus       139 ~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~  218 (264)
T Consensus       238 ~nl~~N~l~~--~v~~sd~~~~v~~~fD~IvsNPPFH~G---------------------~~~~~~i~~~fi~~A~~~L~  294 (342)
T PRK09489        238 ATLAANGLEG--EVFASNVFSEIKGRFDMIISNPPFHDG---------------------IQTSLDAAQTLIRGAVRHLN  294 (342)
T ss_pred             HHHHHHCCCC--EEEECCCCCCCCCCCCEEEECCCCCCC---------------------CCCCHHHHHHHHHHHHHHHH
T ss_conf             9899809886--899756445655678989968852157---------------------52658999999999998612


Q ss_pred             CCCEEEEEEC
Q ss_conf             8878999817
Q gi|254780875|r  219 KDGLCSVEIG  228 (264)
Q Consensus       219 ~~G~l~lEig  228 (264)
T Consensus       295 ~gG~L~iVAN  304 (342)
T PRK09489        295 SGGELRIVAN  304 (342)
T ss_pred             CCCEEEEEEC
T ss_conf             4988999981