HHsearch alignment for GI: 254780875 and conserved domain: PRK09489
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=99.84 E-value=1.6e-21 Score=162.01 Aligned_cols=136 Identities=26% Similarity=0.467 Sum_probs=109.2
Q ss_pred EEEEEEECCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 37677504620512---235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 62 NVRLTLSSDTFEPR---PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 62 ~~~f~v~~~vLIPR---peTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
T Consensus 166 ~l~v~slPGVFS~~~lD~GS~lLL~~l--------~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar 237 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTL--------TPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASR 237 (342)
T ss_pred CEEEECCCCCCCCCCCCHHHHHHHHHC--------CCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 715833687578999787999999737--------832488478606781799999998699976999968899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 20110001222222222222222100233320113332100122111112357543321011232102568999998537
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLN 218 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~ 218 (264)
T Consensus 238 ~nl~~N~l~~--~v~~sd~~~~v~~~fD~IvsNPPFH~G---------------------~~~~~~i~~~fi~~A~~~L~ 294 (342)
T PRK09489 238 ATLAANGLEG--EVFASNVFSEIKGRFDMIISNPPFHDG---------------------IQTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred HHHHHHCCCC--EEEECCCCCCCCCCCCEEEECCCCCCC---------------------CCCCHHHHHHHHHHHHHHHH
T ss_conf 9899809886--899756445655678989968852157---------------------52658999999999998612
Q ss_pred CCCEEEEEEC
Q ss_conf 8878999817
Q gi|254780875|r 219 KDGLCSVEIG 228 (264)
Q Consensus 219 ~~G~l~lEig 228 (264)
T Consensus 295 ~gG~L~iVAN 304 (342)
T PRK09489 295 SGGELRIVAN 304 (342)
T ss_pred CCCEEEEEEC
T ss_conf 4988999981