HHsearch alignment for GI: 254780875 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=99.33 E-value=4.2e-13 Score=106.65 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=114.8
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44237677504620512235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r 59 DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138 (264)
Q Consensus 59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~ 138 (264)
T Consensus 18 ~~kGr~L~~p~~~~~-RPT~drvREalFn~L~~---~i~~~~vLDLFAGSGalGlEALSR-GA~~v~fVE~~~~~~~~i~ 92 (198)
T PRK10909 18 QWRGRKLPVPDSPGL-RPTTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVSQQLI 92 (198)
T ss_pred CCCCCEECCCCCCCC-CCCCHHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH
T ss_conf 568978368999996-87838899999987576---429987998277746889999987-9978999978999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--H
Q ss_conf 20110001222222222222222---100233320113332100122111112357543321011232102568999--9
Q gi|254780875|r 139 SNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG--V 213 (264)
Q Consensus 139 ~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~--~ 213 (264)
T Consensus 93 ~N~~~l~~~-~~~ii~~da~~~L~~~~~~fDlIF~DPPY~-~~--------------------------~~~~~l~~l~~ 144 (198)
T PRK10909 93 KNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFR-KG--------------------------LLEETINLLEQ 144 (198)
T ss_pred HHHHHHCCC-CEEEEEHHHHHHHHCCCCCEEEEEECCCCC-CC--------------------------HHHHHHHHHHH
T ss_conf 999984888-679995569998625599521899899976-55--------------------------59999999998
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 985378878999817667999999999789805899805689975999979
Q gi|254780875|r 214 SRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 214 ~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
T Consensus 145 ~~~L~~~gliiiE~~~~~~l~--~--~~~~~~l~kek~--yG~t~~~lY~~ 189 (198)
T PRK10909 145 NGWLADDALIYVESEVENGLP--T--VPANWSLHREKV--AGQVAYRLYQR 189 (198)
T ss_pred CCCCCCCCEEEEEECCCCCCC--C--CCCCEEEEEECC--CCCEEEEEEEE
T ss_conf 889189969999954888877--7--898859999703--08699999998