HHsearch alignment for GI: 254780875 and conserved domain: PRK10909

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=99.33  E-value=4.2e-13  Score=106.65  Aligned_cols=167  Identities=17%  Similarity=0.154  Sum_probs=114.8

Q ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44237677504620512235655531012332110124686056642142112331222233321001333222002444
Q gi|254780875|r   59 DFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK  138 (264)
Q Consensus        59 ~F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~  138 (264)
T Consensus        18 ~~kGr~L~~p~~~~~-RPT~drvREalFn~L~~---~i~~~~vLDLFAGSGalGlEALSR-GA~~v~fVE~~~~~~~~i~   92 (198)
T PRK10909         18 QWRGRKLPVPDSPGL-RPTTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVSQQLI   92 (198)
T ss_pred             CCCCCEECCCCCCCC-CCCCHHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH
T ss_conf             568978368999996-87838899999987576---429987998277746889999987-9978999978999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--H
Q ss_conf             20110001222222222222222---100233320113332100122111112357543321011232102568999--9
Q gi|254780875|r  139 SNAVTNGVSERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADG--V  213 (264)
Q Consensus       139 ~N~~~~~~~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~--~  213 (264)
T Consensus        93 ~N~~~l~~~-~~~ii~~da~~~L~~~~~~fDlIF~DPPY~-~~--------------------------~~~~~l~~l~~  144 (198)
T PRK10909         93 KNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFR-KG--------------------------LLEETINLLEQ  144 (198)
T ss_pred             HHHHHHCCC-CEEEEEHHHHHHHHCCCCCEEEEEECCCCC-CC--------------------------HHHHHHHHHHH
T ss_conf             999984888-679995569998625599521899899976-55--------------------------59999999998


Q ss_pred             HHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             985378878999817667999999999789805899805689975999979
Q gi|254780875|r  214 SRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR  264 (264)
Q Consensus       214 ~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r  264 (264)
T Consensus       145 ~~~L~~~gliiiE~~~~~~l~--~--~~~~~~l~kek~--yG~t~~~lY~~  189 (198)
T PRK10909        145 NGWLADDALIYVESEVENGLP--T--VPANWSLHREKV--AGQVAYRLYQR  189 (198)
T ss_pred             CCCCCCCCEEEEEECCCCCCC--C--CCCCEEEEEECC--CCCEEEEEEEE
T ss_conf             889189969999954888877--7--898859999703--08699999998