HHsearch alignment for GI: 254780875 and conserved domain: PRK11188
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=98.06 E-value=1.7e-05 Score=56.67 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=84.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-CCH
Q ss_conf 468605664214211233122223-33210013332220024442011000122222222222222---------2-100
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V-EGL 164 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~-~~~ 164 (264)
T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----------pi~-gv~~i~gDi~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----------CCC-CCEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 789989980689975789999973999739998653045-----------378-96764034458899999999858987
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHHC
Q ss_conf 233320113332100122111112357543321011232102568999998537887899981--766799999999978
Q gi|254780875|r 165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVDVVRIFESR 242 (264)
Q Consensus 165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~v~~ll~~~ 242 (264)
T Consensus 118 ~DvVlSD-----------mAPn~tG~~---~~D~-~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~-~~~~~~~~~k~- 180 (209)
T PRK11188 118 VDVVMSD-----------MAPNMSGTP---AVDI-PRAMYLVELALDMCRQVLAPGGSFVVKVFQGE-GFDEYLREIRS- 180 (209)
T ss_pred CCEEECC-----------CCCCCCCCH---HHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CHHHHHHHHHC-
T ss_conf 3089666-----------665667870---3359-99999999999999986267988999996487-99999999970-
Q ss_pred CCCEEEEEECCCCC----CEEEEEE
Q ss_conf 98058998056899----7599997
Q gi|254780875|r 243 KLFLVNAFKDYGGN----DRVLLFC 263 (264)
Q Consensus 243 gf~~v~~~kD~~g~----~R~vi~~ 263 (264)
T Consensus 181 ~F~~V~~~KP~ASR~~S~E~Ylv~~ 205 (209)
T PRK11188 181 LFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred CCCEEEEECCCCCCCCCCEEEEEEE
T ss_conf 2597889998674667854677870