HHsearch alignment for GI: 254780875 and conserved domain: PRK11188

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=98.06  E-value=1.7e-05  Score=56.67  Aligned_cols=139  Identities=17%  Similarity=0.170  Sum_probs=84.5

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------C-CCH
Q ss_conf             468605664214211233122223-33210013332220024442011000122222222222222---------2-100
Q gi|254780875|r   96 RDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------V-EGL  164 (264)
Q Consensus        96 ~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~-~~~  164 (264)
T Consensus        50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----------pi~-gv~~i~gDi~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIV-GVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----------CCC-CCEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             789989980689975789999973999739998653045-----------378-96764034458899999999858987


Q ss_pred             HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHHC
Q ss_conf             233320113332100122111112357543321011232102568999998537887899981--766799999999978
Q gi|254780875|r  165 FDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEI--GYNQKVDVVRIFESR  242 (264)
Q Consensus       165 fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEi--g~~q~~~v~~ll~~~  242 (264)
T Consensus       118 ~DvVlSD-----------mAPn~tG~~---~~D~-~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~-~~~~~~~~~k~-  180 (209)
T PRK11188        118 VDVVMSD-----------MAPNMSGTP---AVDI-PRAMYLVELALDMCRQVLAPGGSFVVKVFQGE-GFDEYLREIRS-  180 (209)
T ss_pred             CCEEECC-----------CCCCCCCCH---HHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CHHHHHHHHHC-
T ss_conf             3089666-----------665667870---3359-99999999999999986267988999996487-99999999970-


Q ss_pred             CCCEEEEEECCCCC----CEEEEEE
Q ss_conf             98058998056899----7599997
Q gi|254780875|r  243 KLFLVNAFKDYGGN----DRVLLFC  263 (264)
Q Consensus       243 gf~~v~~~kD~~g~----~R~vi~~  263 (264)
T Consensus       181 ~F~~V~~~KP~ASR~~S~E~Ylv~~  205 (209)
T PRK11188        181 LFTKVKVRKPDSSRARSREVYIVAT  205 (209)
T ss_pred             CCCEEEEECCCCCCCCCCEEEEEEE
T ss_conf             2597889998674667854677870