HHsearch alignment for GI: 254780875 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=99.06 E-value=2e-10 Score=89.10 Aligned_cols=215 Identities=18% Similarity=0.147 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHCCCC-CCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEEEEEC------CC-CCHHH
Q ss_conf 899999999838999898504488-58989999999999989749837685363144237677504------62-05122
Q gi|254780875|r 5 RDSHSFLCRVTGLSSHQVIVDPDS-VLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSS------DT-FEPRP 76 (264)
Q Consensus 5 ~dA~~Ll~~~l~~~~~~l~~~~~~-~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~~~F~~~~f~v~~------~v-LIPRp 76 (264)
T Consensus 474 ~~~~~~~~~~l~v~~~~v~~K~R~rqkg~~---QY~k~~~---~~~--~~---~v~E~~~~f~vNl~dYlDtGLFLDhR~ 542 (716)
T PRK11783 474 FDALAATPEVLGIPPEKVVLKTRERQKGKN---QYQKLAQ---KGE--FL---IVTEYGAKLWVNLTDYLDTGLFLDHRP 542 (716)
T ss_pred HHHHHHHHHHHCCCHHHEEEEEECCCCCCC---CCCCCCC---CCC--EE---EEEECCEEEEEECCCCCCCCCCCCCHH
T ss_conf 999999999968986786888852577876---4444546---787--69---999578689997772022674544379
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCC
Q ss_conf 35655531012332110124686056642142112331222233321001333222002444201100012-22222222
Q gi|254780875|r 77 ETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS-ERFDTLQS 155 (264)
Q Consensus 77 eTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~-~~i~~~~~ 155 (264)
T Consensus 543 ~R~~i~~~-----------a~gk~fLNLF~YTgt~sv~Aa~g-GA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~a 610 (716)
T PRK11783 543 TRRMIGQM-----------AKGKRFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQA 610 (716)
T ss_pred HHHHHHHH-----------HCCCCEEEEEECCCCEEHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999997-----------07884643122256102133527-9612278627087999999999854999634738964
Q ss_pred CCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 222222---10023332011333210012211111235754332101123210256899999853788789998176679
Q gi|254780875|r 156 DWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232 (264)
Q Consensus 156 d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~ 232 (264)
T Consensus 611 D~~~wl~~~~~~fDli~~DPPtFSnSk~m~~~~dvqr---------------Dh~~li~~~~~~L~~~G~l~FS~N~r~F 675 (716)
T PRK11783 611 DCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQR---------------DHVALIKLAMRLLRPGGTLYFSNNKRGF 675 (716)
T ss_pred CHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC---------------CHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 0899998577766789988999987666788632203---------------0999999999860899689996288763
Q ss_pred HHHHHHHHHCCCCEEEEE-----ECCCCCC
Q ss_conf 999999997898058998-----0568997
Q gi|254780875|r 233 VDVVRIFESRKLFLVNAF-----KDYGGND 257 (264)
Q Consensus 233 ~~v~~ll~~~gf~~v~~~-----kD~~g~~ 257 (264)
T Consensus 676 ~ld~~~l~~~~~~~~dit~~tip~Df~rn~ 705 (716)
T PRK11783 676 KMDEEGLAKLGLAVEEITQKTLPPDFARNP 705 (716)
T ss_pred CCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 428767521596068775445885546799