HHsearch alignment for GI: 254780875 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.59 E-value=6.5e-09 Score=79.11 Aligned_cols=76 Identities=29% Similarity=0.384 Sum_probs=59.3
Q ss_pred CCEEEEECCCCCCCCCCCC---CC-C--------------------------------------CCCCCCCCCCCCCHHH
Q ss_conf 6056642142112331222---23-3--------------------------------------3210013332220024
Q gi|254780875|r 99 VRILDLGTGTGAVCLALLK---ES-P--------------------------------------FFKGVGVDISCKALEI 136 (264)
Q Consensus 99 ~~vLDlG~GsG~i~i~la~---~~-~--------------------------------------~~~v~~~Dis~~al~~ 136 (264)
T Consensus 196 ~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~~r~~~~~~~~~~~i~G~D~D~~ai~~ 275 (716)
T PRK11783 196 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQERARAGLAECSPKFYGSDIDPRVIQA 275 (716)
T ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf 81344666843789999999847798865454564115688999999999999986542234688718999599899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHCCHH
Q ss_conf 44201100012222222222222221----002333201133
Q gi|254780875|r 137 AKSNAVTNGVSERFDTLQSDWFSSVE----GLFDVIVSNPPY 174 (264)
Q Consensus 137 A~~N~~~~~~~~~i~~~~~d~~~~~~----~~fD~IvsNPPY 174 (264)
T Consensus 276 Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPY 317 (716)
T PRK11783 276 ARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPY 317 (716)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCH
T ss_conf 999999819988629995678985798777898289967852